def populate_test(self, tree_filepath, splitscsv_filepath, expected_num_trees): self.tree_filepath = pathmap.data_source_path(tree_filepath) self.taxa_filepath = self.tree_filepath self.splitscsv_filepath = pathmap.data_source_path( splitscsv_filepath) self.expected_num_trees = expected_num_trees self.expected_split_freqs = dict([ (s[0], int(s[1])) for s in csv.reader(open(self.splitscsv_filepath, "rU")) ])
def setUp(self): self.taxa_filepath = pathmap.data_source_path(["trees", "feb032009.tre"]) self.expected_taxlabels = ("T01", "T02", "T03", "T04", "T05", "T06", "T07", "T08", "T09", "T10", "T11", "T12", "T13", "T14", "T15", "T16", "T17", "T18", "T19", "T20", "T21", "T22", "T23", "T24", "T25", "T26", "T27", "T28", "T29", "T30", "T31", "T32", "T33", "T34", "T35", "T36", "T37", "T38", "T39", "T40", "T41", "T42", "T43", "T44", "T45", "T46", "T47", "T48", "T49", "T50", "T51", "T52", "T53", "T54", "T55", "T56", "T57", "T58", "T59")
def setUp(self): self.taxa_filepath = pathmap.data_source_path( ["chars", "primates.chars.nexus"]) self.expected_taxlabels = ( "Lemur catta", "H**o sapiens", "Pan", "Gorilla", "Pongo", "Hylobates", "Macaca fuscata", "Macaca mulatta", "Macaca fascicularis", "Macaca sylvanus", "Saimiri sciureus", "Tarsius syrichta", )
def populate_test(self, tree_filepath, splitscsv_filepath, expected_num_trees): self.tree_filepath = pathmap.data_source_path(tree_filepath) self.taxa_filepath = self.tree_filepath self.splitscsv_filepath = pathmap.data_source_path(splitscsv_filepath) self.expected_num_trees = expected_num_trees self.expected_split_freqs = dict([ (s[0], int(s[1])) for s in csv.reader(open(self.splitscsv_filepath, "rU"))])
def setUp(self): self.taxa_filepath = pathmap.data_source_path(["chars", "primates.chars.nexus"]) self.expected_taxlabels = ("Lemur catta", "H**o sapiens", "Pan", "Gorilla", "Pongo", "Hylobates", "Macaca fuscata", "Macaca mulatta", "Macaca fascicularis", "Macaca sylvanus", "Saimiri sciureus", "Tarsius syrichta", )