def run(args=None):
from dials.command_line import stills_process
stills_process.Processor = Hopper_Processor
stills_process.phil_scope = phil_scope
script = stills_process.Script()
script.run(args)
return script
class Processor(BaseProcessor):
def index(self, experiments, reflections):
from time import time
import copy
from xfel.small_cell.small_cell import small_cell_index_detail
st = time()
logger.info('*' * 80)
logger.info('Indexing Strong Spots')
logger.info('*' * 80)
params = copy.deepcopy(self.params)
max_clique_len, experiments, indexed = small_cell_index_detail(
experiments, reflections, params, write_output=False)
logger.info('')
logger.info('Time Taken = %f seconds' % (time() - st))
return experiments, indexed
if __name__ == '__main__':
from dials.command_line import stills_process
stills_process.Processor = Processor
stills_process.phil_scope = phil_scope
with show_mail_on_error():
script = stills_process.Script()
script.run()