def export(self):
'''
Export the files
'''
from dials.util import export_json
from scitbx.array_family import flex
if self.experiments is not None and len(self.experiments) > 0:
imagesets = [expt.imageset for expt in self.experiments]
else:
imagesets = []
for datablock in self.datablocks:
imagesets.extend(datablock.extract_imagesets())
reflections = None
assert len(self.reflections) == len(imagesets), (len(self.reflections),
len(imagesets))
for i, (refl, imgset) in enumerate(zip(self.reflections, imagesets)):
refl['imageset_id'] = flex.size_t(refl.size(), i)
if reflections is None:
reflections = refl
else:
reflections.extend(refl)
settings = self.params
settings.__inject__('beam_centre', None)
settings.__inject__('reverse_phi', None)
exporter = export_json.ReciprocalLatticeJson(settings=self.params)
exporter.load_models(imagesets, reflections)
exporter.as_json(filename=params.json.filename,
compact=params.json.compact,
n_digits=params.json.n_digits,
datablocks=datablocks)
def export(self):
"""
Export the files
"""
from dials.util import export_json
from scitbx.array_family import flex
imagesets = [expt.imageset for expt in self.experiments]
reflections = None
assert len(self.reflections) == len(imagesets), (
len(self.reflections),
len(imagesets),
)
for i, refl in enumerate(self.reflections):
refl["imageset_id"] = flex.size_t(refl.size(), i)
if reflections is None:
reflections = refl
else:
reflections.extend(refl)
exporter = export_json.ReciprocalLatticeJson(self.experiments,
reflections)
exporter.as_json(
filename=params.json.filename,
compact=params.json.compact,
n_digits=params.json.n_digits,
experiments=self.experiments,
)
def export_json(params, experiments, reflections):
"""
Export reflections in json format
:param params: The phil parameters
:param experiments: The experiment list
:param reflections: The reflection tables
"""
# Check the input
_check_input(experiments, [None])
if not reflections:
raise ValueError("json exporter requires a reflection table")
from scitbx.array_family import flex
from dials.util import export_json
imagesets = [expt.imageset for expt in experiments]
if len(reflections) != len(imagesets):
raise ValueError(
"Mismatch between %d reflections lists and %d imagesets"
% (len(reflections), len(imagesets))
)
selected_reflections = None
for i, refl in enumerate(reflections):
refl["imageset_id"] = flex.size_t(refl.size(), i)
if selected_reflections is None:
selected_reflections = refl
else:
selected_reflections.extend(refl)
exporter = export_json.ReciprocalLatticeJson(experiments, selected_reflections)
exporter.as_json(
filename=params.json.filename,
compact=params.json.compact,
n_digits=params.json.n_digits,
experiments=experiments,
)