def try_read_reflections(self, args, verbose):
"""Try to import reflections.
:param args: The input arguments
:param verbose: Print verbose output
:returns: Unhandled arguments
"""
from dials.util.phil import ReflectionTableConverters
converter = ReflectionTableConverters()
unhandled = []
for argument in args:
try:
self.reflections.append(converter.from_string(argument))
except pickle_errors:
self._handle_converter_error(
argument,
pickle.UnpicklingError(
"Appears to be an invalid pickle file"),
type="Reflections",
validation=True,
)
unhandled.append(argument)
except Exception as e:
self._handle_converter_error(argument, e, type="Reflections")
unhandled.append(argument)
return unhandled
def try_read_reflections(self, args, verbose):
''' Try to import reflections.
:param args: The input arguments
:param verbose: Print verbose output
:returns: Unhandled arguments
'''
from dials.util.phil import ReflectionTableConverters
converter = ReflectionTableConverters()
unhandled = []
for argument in args:
try:
self.reflections.append(converter.from_string(argument))
except Exception:
unhandled.append(argument)
return unhandled
from dials.util.options import flatten_reflections
from dials.util.phil import ReflectionTableConverters
import os
converter = ReflectionTableConverters()
def get_ratio(strong, indexed, directory):
strong_reflections = flatten_reflections(
get_reflection_list(directory, strong))
indexed_reflections = flatten_reflections(
get_reflection_list(directory, indexed))
strong_val = sum_list(strong_reflections)
indexed_val = sum_list(indexed_reflections)
return (indexed_val / float(strong_val)) * 100
def get_num_reflections(strong, directory):
strong_reflections = flatten_reflections(
get_reflection_list(directory, strong))
strong_val = sum_list(strong_reflections)
total_intensity = sum_int(strong_reflections)
return float(strong_val), total_intensity
def get_reflection_list(directory, file_name):
reflection_list = []
reflection_list.append(
converter.from_string(os.path.join(directory, file_name)))
return reflection_list