def subst_vars(src, dst, vars):
try:
src_file = open(src, "r")
except os.error as err:
raise DistutilsFileError, "could not open '{0}': {1)".format(src, err)
try:
dest_file = open(dst, "w")
except os.error as err:
raise DistutilsFileError, "could not create '{0}': {1}".format(dst, err)
with src_file:
with dest_file:
for line in src_file:
new_line = distutils_subst_vars(line, vars)
dest_file.write(new_line)
def subst_vars(src, dst, vars):
try:
src_file = open(src, "r")
except os.error as err:
raise DistutilsFileError, "could not open '{0}': {1)".format(src, err)
try:
dest_file = open(dst, "w")
except os.error as err:
raise DistutilsFileError, "could not create '{0}': {1}".format(dst, err)
with src_file:
with dest_file:
for line in src_file:
new_line = distutils_subst_vars(line, vars)
dest_file.write(new_line)
def subst_vars(src, dst, vars):
"""
substitute variables (string starting with $) in file
:param src: the file containing variable to substitute
:type src: string
:param dst: the destination file
:type dst: string
:param vars: the variables to substitute in dict key are variable name
:type vars: dict
"""
try:
src_file = open(src, "r")
except os.error as err:
raise DistutilsFileError("could not open '{0}': {1)".format(src, err))
try:
dest_file = open(dst, "w")
except os.error as err:
raise DistutilsFileError("could not create '{0}': {1}".format(dst, err))
with src_file:
with dest_file:
for line in src_file:
new_line = distutils_subst_vars(line, vars)
dest_file.write(new_line)
def subst_vars(src, dst, vars):
"""
substitute variables (string starting with $) in file
:param src: the file containing variable to substitute
:type src: string
:param dst: the destination file
:type dst: string
:param vars: the variables to substitute in dict key are variable name
:type vars: dict
"""
try:
src_file = open(src, "r")
except os.error as err:
raise DistutilsFileError("could not open '{0}': {1}".format(src, err))
try:
dest_file = open(dst, "w")
except os.error as err:
raise DistutilsFileError("could not create '{0}': {1}".format(dst, err))
with src_file:
with dest_file:
for line in src_file:
new_line = distutils_subst_vars(line, vars)
dest_file.write(new_line)
def subst_vars(src, dst, vars):
"""
substitute variables (string starting with $) in file
:param src: the file containing variable to substitute
:type src: string
:param dst: the destination file
:type dst: string
:param vars: the variables to substitute in dict key are variable name
:type vars: dict
"""
try:
src_file = open(src, "r")
except os.error as err:
raise DistutilsFileError("could not open '{0}': {1}".format(src, err))
try:
dest_file = open(dst, "w")
except os.error as err:
raise DistutilsFileError("could not create '{0}': {1}".format(
dst, err))
with src_file:
with dest_file:
try:
file = ''
for line in src_file:
file += line
new_line = distutils_subst_vars(line, vars)
dest_file.write(new_line)
except UnicodeDecodeError as err:
import sys
print(
"####################### file raising a error#######################3",
file=sys.stderr)
print(file, file=sys.stderr)
print(
"###################### end of debug ###############################",
file=sys.stderr)
raise RuntimeError(f"{src}: {sys.getdefaultencoding()} :{err}")
install.run(self)
def subst_vars(src, dst, vars):
try:
src_file = open(src, "r")
except os.error, err:
raise DistutilsFileError, "could not open '%s': %s" % (src, err)
try:
dest_file = open(dst, "w")
except os.error, err:
raise DistutilsFileError, "could not create '%s': %s" % (dst, err)
with src_file:
with dest_file:
for line in src_file:
new_line = distutils_subst_vars(line, vars)
dest_file.write(new_line)
class UsageDistribution(Distribution):
def __init__(self, attrs = None):
#It's important to define opotions before to call __init__
#otherwise AttributeError: UsageDistribution instance has no attribute 'conf_files'
self.conf_files = None
self.doc_files = None
self.fix_prefix = None
self.fix_conf = None
Distribution.__init__(self, attrs = attrs)
self.common_usage = """\
return install_dir
def subst_vars(src, dst, vars):
try:
src_file = open(src, "r")
except os.error, err:
raise DistutilsFileError, "could not open '%s': %s" % (src, err)
try:
dest_file = open(dst, "w")
except os.error, err:
raise DistutilsFileError, "could not create '%s': %s" % (dst, err)
with src_file:
with dest_file:
for line in src_file:
new_line = distutils_subst_vars(line, vars)
dest_file.write(new_line)
require_python = ['python (>=2.7, <3.0)']
require_packages = []
setup(
name='macsyfinder',
version=time.strftime("1.0.1"),
description="""MacSyFinder: Detection of macromolecular systems
in protein datasets using systems modelling and similarity search""",
author="Sophie Abby, Bertrand Néron",
author_email="[email protected], [email protected]",
classifiers=[
'Operating System :: POSIX',
