class MeasurementValueFilter(filters.FilterSet):
assay = django_filters.ModelChoiceFilter(
name='measurement__assay',
queryset=models.Assay.objects.all(),
)
created_before = django_filters.IsoDateTimeFilter(
name='updated__mod_time',
lookup_expr='lte',
)
created_after = django_filters.IsoDateTimeFilter(
name='updated__mod_time',
lookup_expr='gte',
)
line = django_filters.ModelChoiceFilter(
name='measurement__assay__line',
queryset=models.Line.objects.all(),
)
x__gt = django_filters.NumberFilter(name='x', lookup_expr='0__gte')
x__lt = django_filters.NumberFilter(name='x', lookup_expr='0__lte')
y__gt = django_filters.NumberFilter(name='y', lookup_expr='0__gte')
y__lt = django_filters.NumberFilter(name='y', lookup_expr='0__lte')
class Meta:
model = models.MeasurementValue
fields = {'measurement': ['exact', 'in']}
class MeasurementFilter(filters.FilterSet):
active = django_filters.BooleanFilter(name='active')
created_before = django_filters.IsoDateTimeFilter(
name='update_ref__mod_time',
lookup_expr='lte',
)
created_after = django_filters.IsoDateTimeFilter(
name='update_ref__mod_time',
lookup_expr='gte',
)
compartment = django_filters.ChoiceFilter(
name='compartment',
choices=models.Measurement.Compartment.CHOICE,
)
line = django_filters.ModelChoiceFilter(
name='assay__line',
queryset=models.Line.objects.all(),
)
measurement_format = django_filters.ChoiceFilter(
name='measurement_format',
choices=models.Measurement.Format.CHOICE,
)
class Meta:
model = models.Measurement
fields = {
'assay': ['exact', 'in'],
'measurement_type': ['exact', 'in'],
'x_units': ['exact', 'in'],
'y_units': ['exact', 'in']
}
class MeasurementFilter(filters.FilterSet):
active = django_filters.BooleanFilter(field_name="active")
created_before = django_filters.IsoDateTimeFilter(
field_name="update_ref__mod_time", lookup_expr="lte"
)
created_after = django_filters.IsoDateTimeFilter(
field_name="update_ref__mod_time", lookup_expr="gte"
)
compartment = django_filters.ChoiceFilter(
field_name="compartment", choices=models.Measurement.Compartment.CHOICE
)
line = django_filters.ModelChoiceFilter(
field_name="assay__line", queryset=models.Line.objects.all()
)
measurement_format = django_filters.ChoiceFilter(
field_name="measurement_format", choices=models.Measurement.Format.CHOICE
)
class Meta:
model = models.Measurement
fields = {
"assay": ["exact", "in"],
"measurement_type": ["exact", "in"],
"x_units": ["exact", "in"],
"y_units": ["exact", "in"],
}
class EDDObjectFilter(filters.FilterSet):
active = django_filters.BooleanFilter(name='active')
created_before = django_filters.IsoDateTimeFilter(name='created__mod_time', lookup_expr='lte')
created_after = django_filters.IsoDateTimeFilter(name='created__mod_time', lookup_expr='gte')
description = django_filters.CharFilter(name='description', lookup_expr='iregex')
name = django_filters.CharFilter(name='name', lookup_expr='iregex')
updated_before = django_filters.IsoDateTimeFilter(name='updated__mod_time', lookup_expr='lte')
updated_after = django_filters.IsoDateTimeFilter(name='updated__mod_time', lookup_expr='gte')
class Meta:
model = models.EDDObject
fields = []
class EDDObjectFilter(filters.FilterSet):
active = django_filters.BooleanFilter(
field_name="active",
help_text=
_("Filter on currently active/visible items (True/1/yes or false/0/no)"
),
)
created_before = django_filters.IsoDateTimeFilter(
field_name="created__mod_time",
help_text=_("Use an ISO-8601-like datetime: 2020-01-01 00:00:00"),
lookup_expr="lte",
)
created_after = django_filters.IsoDateTimeFilter(
field_name="created__mod_time",
help_text=_("Use an ISO-8601-like datetime: 2020-01-01 00:00:00"),
lookup_expr="gte",
)
description = django_filters.CharFilter(
field_name="description",
help_text=_("Runs a regular expression search on item description"),
lookup_expr="iregex",
)
name = django_filters.CharFilter(
field_name="name",
help_text=_("Runs a regular expression search on item name"),
lookup_expr="iregex",
)
updated_before = django_filters.IsoDateTimeFilter(
field_name="updated__mod_time",
help_text=_("Use an ISO-8601-like datetime: 2020-01-01 00:00:00"),
lookup_expr="lte",
)
updated_after = django_filters.IsoDateTimeFilter(
field_name="updated__mod_time",
help_text=_("Use an ISO-8601-like datetime: 2020-01-01 00:00:00"),
lookup_expr="gte",
)
class Meta:
model = models.EDDObject
fields = []
@classmethod
def truthy(cls, value):
"""
Utility to check if a string filter value is Boolean True for filtering.
Accepts case-insensitive "true", "yes", "t", "y", "1" as True. All
other values are treated as False.
"""
return str(value).lower() in {"true", "t", "yes", "y", "1"}
class EDDObjectFilter(filters.FilterSet):
active = django_filters.BooleanFilter(field_name="active")
created_before = django_filters.IsoDateTimeFilter(
field_name="created__mod_time", lookup_expr="lte")
created_after = django_filters.IsoDateTimeFilter(
field_name="created__mod_time", lookup_expr="gte")
description = django_filters.CharFilter(field_name="description",
lookup_expr="iregex")
name = django_filters.CharFilter(field_name="name", lookup_expr="iregex")
updated_before = django_filters.IsoDateTimeFilter(
field_name="updated__mod_time", lookup_expr="lte")
updated_after = django_filters.IsoDateTimeFilter(
field_name="updated__mod_time", lookup_expr="gte")
class Meta:
model = models.EDDObject
fields = []
class MeasurementValueFilter(filters.FilterSet):
assay = django_filters.ModelChoiceFilter(
field_name="measurement__assay", queryset=models.Assay.objects.all())
created_before = django_filters.IsoDateTimeFilter(
field_name="updated__mod_time", lookup_expr="lte")
created_after = django_filters.IsoDateTimeFilter(
field_name="updated__mod_time", lookup_expr="gte")
line = django_filters.ModelChoiceFilter(
field_name="measurement__assay__line",
queryset=models.Line.objects.all())
x__gt = django_filters.NumberFilter(field_name="x", lookup_expr="0__gte")
x__lt = django_filters.NumberFilter(field_name="x", lookup_expr="0__lte")
y__gt = django_filters.NumberFilter(field_name="y", lookup_expr="0__gte")
y__lt = django_filters.NumberFilter(field_name="y", lookup_expr="0__lte")
class Meta:
model = models.MeasurementValue
fields = {"measurement": ["exact", "in"]}
class MeasurementFilter(filters.FilterSet):
active = django_filters.BooleanFilter(
field_name="active",
help_text=
_("Filter on currently active/visible items (True/1/yes or false/0/no)"
),
)
assay = ModelChoiceInFilter(
field_name="assay",
help_text=_("IDs of assay(s) to limit measurements"),
queryset=models.Assay.objects.all(),
)
created_before = django_filters.IsoDateTimeFilter(
field_name="created__mod_time",
help_text=_("Use an ISO-8601-like datetime: 2020-01-01 00:00:00"),
lookup_expr="lte",
)
created_after = django_filters.IsoDateTimeFilter(
field_name="created__mod_time",
help_text=_("Use an ISO-8601-like datetime: 2020-01-01 00:00:00"),
lookup_expr="gte",
)
compartment = django_filters.ChoiceFilter(
choices=models.Measurement.Compartment.CHOICE,
field_name="compartment",
help_text=
_("One of the compartment codes, 0, 1, 2 for N/A, Intracellular, Extracellular"
),
)
format = django_filters.ChoiceFilter(
choices=models.Measurement.Format.CHOICE,
field_name="measurement_format",
help_text=_("One of the format codes; currently only '0' for Scalar "
"format values is supported"),
)
in_study = django_filters.CharFilter(
field_name="study",
help_text=_("An identifier for the study; can use ID, UUID, or Slug"),
method=filter_in_study,
)
line = ModelChoiceInFilter(
field_name="assay__line",
help_text=_("IDs of line(s) to limit measurements"),
queryset=models.Line.objects.all(),
)
protocol = ModelChoiceInFilter(
field_name="assay__protocol",
help_text=_("IDs of protocol(s) to limit measurements"),
queryset=models.Protocol.objects.all(),
)
type = ModelChoiceInFilter(
field_name="measurement_type",
help_text=_("IDs of measurement type(s) to limit measurements"),
queryset=models.MeasurementType.objects.all(),
)
x_units = ModelChoiceInFilter(
field_name="x_units",
help_text=_("IDs of unit(s) used on the x-axis to limit measurements"),
queryset=models.MeasurementUnit.objects.all(),
)
y_units = ModelChoiceInFilter(
field_name="y_units",
help_text=_("IDs of unit(s) used on the y-axis to limit measurements"),
queryset=models.MeasurementUnit.objects.all(),
)
class Meta:
model = models.Measurement
fields = []