def main():
problem_dataset_dir = os.path.join('Problems', 'Problem9')
solution_dir = os.path.join("Problems", "Problem9Solution")
data_reader = DataReader(problem_dataset_dir)
test_cases, output = data_reader.get_data()
for train_i in range(0, len(output)):
case = test_cases[train_i]
case_output = output[train_i]
genome = case[0]
k = case[1][0]
d = case[1][1]
dna = DNA(genome)
k_mers = dna.most_frequent_missmatched_k_mer(int(k), int(d))
if set(case_output) != set(k_mers):
raise Exception("Output not matched!\nExpecting: " + str(case_output) + "\nFound: " + str(k_mers))
print("Passed training data..")
writer = DataWriter(solution_dir)
usage = Usage()
for test_i in range(len(test_cases) - len(output) + 1, len(test_cases)):
usage.start()
case = test_cases[test_i]
genome = case[0]
k = case[1][0]
d = case[1][1]
dna = DNA(genome)
k_mers = dna.most_frequent_missmatched_k_mer(int(k), int(d))
usage.end()
writer.write_data(test_i, k_mers, usage.get_execution_time(), usage.get_memory_usage())
print("\n\nInput:\n" + genome + "\n" + str(k) + "\n" + str(d))
print("\n\nOutput")
print("=====")
print('\n'.join(map(lambda v: str(v), k_mers)))
print("\n")
print("======")
print("Execution Time: " + str(usage.get_execution_time()) + " s")
print("Memory Used: " + str(usage.get_memory_usage()) + " MB")
def main():
problem_dataset_dir = os.path.join('Problems', 'Problem9')
solution_dir = os.path.join("Problems", "Problem9Solution")
data_reader = DataReader(problem_dataset_dir)
test_cases, output = data_reader.get_data()
for train_i in range(0, len(output)):
case = test_cases[train_i]
case_output = output[train_i]
genome = case[0]
k = case[1][0]
d = case[1][1]
dna = DNA(genome)
k_mers = dna.most_frequent_missmatched_k_mer(int(k), int(d))
if set(case_output) != set(k_mers):
raise Exception("Output not matched!\nExpecting: " +
str(case_output) + "\nFound: " + str(k_mers))
raise Exception("Output not matched!\nExpecting: " +
str(case_output) + "\nFound: " + str(k_mers))
print("Passed training data..")
writer = DataWriter(solution_dir)
usage = Usage()
for test_i in range(len(test_cases) - len(output) + 1, len(test_cases)):
usage.start()
case = test_cases[test_i]
genome = case[0]
k = case[1][0]
d = case[1][1]
dna = DNA(genome)
k_mers = dna.most_frequent_missmatched_k_mer(int(k), int(d))
usage.end()
writer.write_data(test_i, k_mers, usage.get_execution_time(),
usage.get_memory_usage())
print("\n\nInput:\n" + genome + "\n" + str(k) + "\n" + str(d))
print("\n\nOutput")
print("=====")
print('\n'.join(map(lambda v: str(v), k_mers)))
print("\n")
print("======")
print("Execution Time: " + str(usage.get_execution_time()) + " s")
print("Memory Used: " + str(usage.get_memory_usage()) + " MB")
