def test19():
"""Test with differnt column width"""
colwidth = random.randint(60, 100)
L = [
dnaSeq_sol.dnaSeq(randomSeq(random.randint(300, 600)))
for i in range(5)
]
for d in L:
d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)])
dnaSeq_sol.writeFA(L, "test1.fa", col_width=colwidth)
L2 = []
for l in L:
d = dnaSeq.dnaSeq(str(l))
d.info = l.info
L2.append(d)
dnaSeq.writeFA(L2, "test2.fa", col_width=colwidth)
## compare files
for l1, l2 in zip(open("test1.fa"), open("test2.fa")):
if l1[0] == '>':
if l1.lstrip('>').strip() != l2.lstrip('>').strip():
return False
else:
if l1 != l2:
return False
return True
def test19():
"""Test with differnt column width"""
colwidth = random.randint(60,100)
L = [dnaSeq_sol.dnaSeq(randomSeq(random.randint(300,600))) for i in range(5)]
for d in L:
d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)])
dnaSeq_sol.writeFA(L, "test1.fa", col_width = colwidth)
L2 = []
for l in L:
d = dnaSeq.dnaSeq(str(l))
d.info = l.info
L2.append(d)
dnaSeq.writeFA(L2, "test2.fa", col_width = colwidth)
## compare files
for l1,l2 in zip(open("test1.fa"), open("test2.fa")):
if l1[0] == '>':
if l1.lstrip('>').strip() != l2.lstrip('>').strip():
return False
else:
if l1 != l2:
return False
return True
def test17():
L = [dnaSeq_sol.dnaSeq(randomSeq(random.randint(300,600))) for i in range(5)]
for d in L:
d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)])
dnaSeq_sol.writeFA(L, "test.fa")
L2 = dnaSeq.readFA("test.fa")
return all([o1.info.lstrip('>').strip()==o2.info.lstrip('>').strip() and str(o1)==str(o2) for o1,o2 in zip(L,L2)])
def test16():
n = random.randint(50, 400)
s = randomSeq(n)
seq1 = dnaSeq.dnaSeq(s)
seq2 = dnaSeq_sol.dnaSeq(s)
seq1.reverse_complement()
seq2.reverse_complement()
return str(seq1) == str(seq2)
def test16():
n = random.randint(50,400)
s = randomSeq(n)
seq1 = dnaSeq.dnaSeq(s)
seq2 = dnaSeq_sol.dnaSeq(s)
seq1.reverse_complement()
seq2.reverse_complement()
return str(seq1)==str(seq2)
def test17():
L = [
dnaSeq_sol.dnaSeq(randomSeq(random.randint(300, 600)))
for i in range(5)
]
for d in L:
d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)])
dnaSeq_sol.writeFA(L, "test.fa")
L2 = dnaSeq.readFA("test.fa")
return all([
o1.info.lstrip('>').strip() == o2.info.lstrip('>').strip()
and str(o1) == str(o2) for o1, o2 in zip(L, L2)
])