def application(output_folder="output",
stdout_filename="test.txt",
reporter_filename="Report_TBHIV_ByAge.csv",
config_filename="config.json",
report_name=dtk_sft.sft_output_filename,
debug=False):
if debug:
print("output_folder: " + output_folder)
print("stdout_filename: " + stdout_filename + "\n")
print("reporter_filename: " + reporter_filename + "\n")
print("config_filename: " + config_filename + "\n")
print("report_name: " + report_name + "\n")
print("debug: " + str(debug) + "\n")
dtk_sft.wait_for_done()
param_obj = trs.load_emod_parameters(config_filename, debug)
output_dict = trs.parse_output_file(
matches, ReportColumn.hivdeaths, stdout_filename,
param_obj[trs.Config.simulation_timestep], debug)
report_column_list = [
ReportColumn.year, ReportColumn.agebin, ReportColumn.hivdeaths,
ReportColumn.diseasedeaths
]
reporter_df = trs.parse_custom_reporter(
report_column_list,
reporter_path=output_folder,
reporter_filename=reporter_filename,
debug=debug)
trs.create_report_file_incidence(ReportColumn.hivdeaths, ReportColumn.year,
param_obj, output_dict, reporter_df,
report_name, debug)
def application(output_folder="output",
stdout_filename="test.txt",
reporter_filename="Report_TBHIV_ByAge.csv",
inset_chart_filename="InsetChart.json",
migration_report_filename="ReportHumanMigrationTracking.csv",
config_filename="config.json",
report_name=dtk_sft.sft_output_filename,
debug=False):
if debug:
print("output_folder: " + output_folder)
print("stdout_filename: " + stdout_filename + "\n")
print("reporter_filename: " + reporter_filename + "\n")
print("inset_chart_filename: " + inset_chart_filename + "\n")
print("migration_report_filename: " + migration_report_filename + "\n")
print("config_filename: " + config_filename + "\n")
print("report_name: " + report_name + "\n")
print("debug: " + str(debug) + "\n")
dtk_sft.wait_for_done()
param_obj = tms.load_emod_parameters([
Config.config_name, Config.simulation_timestep, Config.duration,
Config.num_core, Config.demog_filename
], config_filename, debug)
demog_filename = param_obj[Config.demog_filename][-1]
node_list = tms.get_node_counts(demog_filename)
json_obj = tms.parse_json_report([InsetChart.disease_death],
inset_chart_filename, output_folder,
debug)
migration_df = tms.load_migration_report(migration_report_filename,
output_folder)
report_column_list = [
ReportColumn.year, ReportColumn.agebin, ReportColumn.hivdeaths,
ReportColumn.diseasedeaths
]
reporter_df = trs.parse_custom_reporter(
report_column_list,
reporter_path=output_folder,
reporter_filename=reporter_filename,
debug=debug)
create_report_file_incidence(ReportColumn.diseasedeaths,
ReportColumn.hivdeaths, ReportColumn.year,
json_obj, param_obj, reporter_df,
migration_df, node_list, stdout_filename,
report_name, debug)