def application(output_folder="output",
stdout_filename="test.txt",
config_filename="config.json",
property_report_name="PropertyReportEnvironmental.json",
report_name=sft.sft_output_filename,
debug=False):
if debug:
print("output_folder: " + output_folder)
print("stdout_filename: " + stdout_filename + "\n")
print("property_report_name: " + property_report_name + "\n")
print("config_filename: " + config_filename + "\n")
print("report_name: " + report_name + "\n")
print("debug: " + str(debug) + "\n")
sft.wait_for_done(stdout_filename)
config_obj = General_Support.load_config_parameters(
config_filename, config_keys, debug)
stdout_df = parse_stdout_file(stdout_filename,
config_obj[ConfigKeys.Simulation_Timestep],
debug)
demo_path = "Assets" if stdout_filename == "StdOut.txt" else ""
property_list = HINT_Support.load_demo_mr_overlay_file(
config_obj[ConfigKeys.Demographics_Filenames][-1], demo_path, debug)
property_keys = HINT_Support.build_channel_string_for_property(
property_list, channels, debug)
property_df = HINT_Support.parse_property_report_json(
property_report_name, output_folder, property_keys, debug)
property_obj = property_list[0] # this test only has one property object
create_report_file(config_obj, stdout_df, property_obj, property_df,
report_name, debug)
def application( output_folder="output", stdout_filename="test.txt",
property_report_name="PropertyReportEnvironmental.json",
report_event_recorder="ReportNodeEventRecorder.csv",
config_filename="config.json", campaign_filename="campaign.json",
report_name=sft.sft_output_filename,
debug=False):
if debug:
print("output_folder: " + output_folder)
print("stdout_filename: " + stdout_filename+ "\n")
print("property_report_name: " + property_report_name+ "\n")
print("report_event_recorder: " + report_event_recorder+ "\n")
print("config_filename: " + config_filename + "\n")
print("campaign_filename: " + campaign_filename + "\n")
print("report_name: " + report_name + "\n")
print("debug: " + str(debug) + "\n")
sft.wait_for_done(stdout_filename)
config_obj = General_Support.load_config_parameters(config_filename, Diagnostic_Support.config_keys, debug)
demo_overlay_file = config_obj[ConfigKeys.Demographics_Filenames][-1]
campaign_obj = Diagnostic_Support.load_campaign_file(campaign_filename, debug)
demo_path = "Assets" if stdout_filename == "StdOut.txt" else ""
property_obj = HINT_Support.load_demo_mr_overlay_file(demo_overlay_file, demo_path, debug)[0]
ip_key_value = campaign_obj[CampaignKeys.EnvironmentalDiagnosticKeys.Environment_IP_Key_Value]
property_keys = []
for channel in Diagnostic_Support.channels:
property_keys.append("{0}:{1}".format(channel, ip_key_value))
property_df = HINT_Support.parse_property_report_json(property_report_name, output_folder, property_keys, debug)
stdout_df = Diagnostic_Support.parse_stdout_file(stdout_filename, config_obj[ConfigKeys.Simulation_Timestep], debug)
recorder_obj = Diagnostic_Support.parse_report_event_recorder(output_folder, report_event_recorder, debug)
create_report_file(config_obj, campaign_obj, property_obj, property_df, stdout_df, recorder_obj, report_name,
report_event_recorder, stdout_filename, debug)
def application( output_folder="output", stdout_filename="test.txt", config_filename="config.json",
property_report_name="PropertyReportEnvironmental.json",
report_name=sft.sft_output_filename,
debug=False):
if debug:
print("output_folder: " + output_folder)
print("stdout_filename: " + stdout_filename+ "\n")
print("property_report_name: " + property_report_name+ "\n")
print("config_filename: " + config_filename + "\n")
print("report_name: " + report_name + "\n")
print("debug: " + str(debug) + "\n")
sft.wait_for_done(stdout_filename)
config_obj = General_Support.load_config_parameters(config_filename, config_keys, debug)
stdout_df = parse_stdout_file(stdout_filename, config_obj[ConfigKeys.Simulation_Timestep], debug)
demo_path = "Assets" if stdout_filename == "StdOut.txt" else ""
property_list = HINT_Support.load_demo_mr_overlay_file(
config_obj[ConfigKeys.Demographics_Filenames][-1], demo_path, debug)
property_keys = HINT_Support.build_channel_string_for_property(property_list, channels, debug)
property_df = HINT_Support.parse_property_report_json(property_report_name, output_folder, property_keys, debug)
property_obj = property_list[0] # this test only has one property object
create_report_file(config_obj, stdout_df, property_obj, property_df, report_name, debug)
def application( output_folder="output", stdout_filename="test.txt", config_filename="config.json",
report_name=sft.sft_output_filename,
debug=False):
if debug:
print( "output_folder: " + output_folder )
print( "stdout_filename: " + stdout_filename+ "\n" )
print( "config_filename: " + config_filename + "\n" )
print( "report_name: " + report_name + "\n" )
print( "debug: " + str(debug) + "\n" )
sft.wait_for_done(stdout_filename)
config_obj = General_Support.load_config_parameters(config_filename, config_keys, debug)
stdout_df = parse_stdout_file(stdout_filename, config_obj[ConfigKeys.Simulation_Timestep], debug)
create_report_file(config_obj, stdout_df, report_name, debug)
def application(output_folder="output",
stdout_filename="test.txt",
property_report_name="PropertyReportEnvironmental.json",
report_event_recorder="ReportNodeEventRecorder.csv",
config_filename="config.json",
campaign_filename="campaign.json",
report_name=sft.sft_output_filename,
debug=False):
if debug:
print("output_folder: " + output_folder)
print("stdout_filename: " + stdout_filename + "\n")
print("property_report_name: " + property_report_name + "\n")
print("report_event_recorder: " + report_event_recorder + "\n")
print("config_filename: " + config_filename + "\n")
print("campaign_filename: " + campaign_filename + "\n")
print("report_name: " + report_name + "\n")
print("debug: " + str(debug) + "\n")
sft.wait_for_done(stdout_filename)
config_obj = General_Support.load_config_parameters(
config_filename, Diagnostic_Support.config_keys, debug)
demo_overlay_file = config_obj[ConfigKeys.Demographics_Filenames][-1]
campaign_obj = Diagnostic_Support.load_campaign_file(
campaign_filename, debug)
demo_path = "Assets" if stdout_filename == "StdOut.txt" else ""
property_obj = HINT_Support.load_demo_mr_overlay_file(
demo_overlay_file, demo_path, debug)[0]
ip_key_value = campaign_obj[
CampaignKeys.EnvironmentalDiagnosticKeys.Environment_IP_Key_Value]
property_keys = []
for channel in Diagnostic_Support.channels:
property_keys.append("{0}:{1}".format(channel, ip_key_value))
property_df = HINT_Support.parse_property_report_json(
property_report_name, output_folder, property_keys, debug)
stdout_df = Diagnostic_Support.parse_stdout_file(
stdout_filename, config_obj[ConfigKeys.Simulation_Timestep], debug)
recorder_obj = Diagnostic_Support.parse_report_event_recorder(
output_folder, report_event_recorder, debug)
create_report_file(config_obj, campaign_obj, property_obj, property_df,
stdout_df, recorder_obj, report_name,
report_event_recorder, stdout_filename, debug)
def application(output_folder="output",
stdout_filename="test.txt",
config_filename="config.json",
report_name=sft.sft_output_filename,
debug=False):
if debug:
print("output_folder: " + output_folder)
print("stdout_filename: " + stdout_filename + "\n")
print("config_filename: " + config_filename + "\n")
print("report_name: " + report_name + "\n")
print("debug: " + str(debug) + "\n")
sft.wait_for_done(stdout_filename)
config_obj = General_Support.load_config_parameters(
config_filename, config_keys, debug)
stdout_df = parse_stdout_file(stdout_filename,
config_obj[ConfigKeys.Simulation_Timestep],
debug)
create_report_file(config_obj, stdout_df, report_name, debug)
def application( output_folder="output", stdout_filename="test.txt", report_event_recorder="ReportNodeEventRecorder.csv",
config_filename="config.json", campaign_filename="campaign.json",
report_name=sft.sft_output_filename,
debug=False):
if debug:
print("output_folder: " + output_folder)
print("stdout_filename: " + stdout_filename+ "\n")
print("report_event_recorder: " + report_event_recorder+ "\n")
print("config_filename: " + config_filename + "\n")
print("campaign_filename: " + campaign_filename + "\n")
print("report_name: " + report_name + "\n")
print("debug: " + str(debug) + "\n")
sft.wait_for_done(stdout_filename)
config_obj = General_Support.load_config_parameters(config_filename, Diagnostic_Support.config_keys, debug)
campaign_obj = Diagnostic_Support.load_campaign_file(campaign_filename, debug)
stdout_df = Diagnostic_Support.parse_stdout_file(stdout_filename, config_obj[ConfigKeys.Simulation_Timestep], debug)
recorder_obj = Diagnostic_Support.parse_report_event_recorder(output_folder, report_event_recorder, debug)
create_report_file(config_obj, campaign_obj, stdout_df, recorder_obj, report_name, report_event_recorder, debug)
def create_report_file(self, attenuation, inset_chart_obj, report_name,
debug):
# contagion trails attenuation by one day. Attenuation changes to 0, next day contagion should be 0
success = True
config_name = General_Support.load_config_parameters(
keys=[General_Support.ConfigKeys.Config_Name])[
General_Support.ConfigKeys.Config_Name]
with open(report_name, "w") as report_file:
report_file.write("Results for {}:\n".format(config_name))
if not inset_chart_obj:
success = False
report_file.write(
"BAD: Not finding any data from inset chart.\n")
elif not attenuation:
# make sure we have found the correct debug data
success = False
report_file.write(
"BAD: Couldn't find current_exposures_attenuation_{} ."
"\n".format(self.route))
else:
new_infections = inset_chart_obj[self.chart_channels[0]]
if len(attenuation) + 1 != len(new_infections):
success = False
err_template = "BAD: Length difference between {2} attenuation: {0} new infections {2}: {1}\n"
report_file.write(
err_template.format(len(attenuation),
len(new_infections), self.route))
else:
for i in range(len(attenuation)):
# when the exposures attenuation is set to 0, there should be no new infections (the next day)
if attenuation[i] == 0 and new_infections[i + 1] != 0:
success = False
report_file.write(
"BAD: At time {0}: the {1} is {2} from Stdout, "
"while the contagion is {3} from InsetChart.json.\n"
.format(i + 1, self.attenuation_text,
attenuation[i], new_infections[i + 1]))
# mapping all the large contagion #s to 1s for better viewing of attenuation data
for i in range(0, len(new_infections)):
if new_infections[i] > 1:
new_infections[i] = 1
# showing relevant subset
sft.plot_data(
attenuation,
new_infections[1:],
label1="Attenuation",
label2="New Infections {}".format(self.route),
title="Vaccine Linear Exposures {}\n"
"(when attenuation is 0, New Infections should be "
"0)".format(self.route),
xlabel="Time",
ylabel="",
category='vaccine_linear_exposures_{}'.format(
self.route),
overlap=False,
alpha=0.5)
if success:
report_file.write(
"GOOD: When Attenuation of {} exposures is set to 0, there are no new infections."
"\n".format(self.route))
report_file.write(sft.format_success_msg(success))