def dMutAdd(project, mutID, mutparent,kind, name='', descr='', color=None):
'''
Check and add a mutant
'''
org = Organism(project)
if org.isOrg(mutID):
logger.warning('Organism %s is already present'%mutID)
logger.warning('Remove it before addition')
return False
if not org.isOrg(mutparent):
logger.error('Parent organism %s not present!'%mutparent)
return False
elif org.isMutant(mutparent):
logger.error('Parent organism %s cannot be a mutant!'%mutparent)
return False
parents = len(org) - org.howManyMutants()
if parents != 1:
logger.error('Only one parent is allowed!')
return False
if not color:
org.addOrg(mutID, name=name, description=descr,
mutant=True, reference=mutparent, mkind=kind)
else:
org.addOrg(mutID, name=name, description=descr,
mutant=True, reference=mutparent, mkind=kind, color=color)
logger.info('Mutant %s (%s) added'
%(mutID, org.getOrg(mutID).mkind))
return True
def dAdd(project, orgID, name='', descr='', color=None):
'''
Add a single organism
'''
org = Organism(project)
# If trying to override a present organism, throw an error
if org.isOrg(orgID):
logger.warning('Organism %s is already present'%orgID)
logger.warning('Remove it before addition')
return False
if not color:
org.addOrg(orgID, name=name, description=descr)
else:
org.addOrg(orgID, name=name, description=descr, color=color)
logger.info('Added organism %s'%orgID)
return True
