def main():
#filename = sys.argv[1]
#exportDir = sys.argv[2]
inputDir = "/mnt/med-groups-lmu/ls1/users/l/lsalomie/"
defaultName = "lif.lif"
outputDir = "/home/hajaalin/tmp/lifexporttest"
filename = OpenDialog("Choose LIF",inputDir,defaultName).getPath()
if not filename:
# user canceled dialog
return
chooser = DirectoryChooser("Choose export directory")
chooser.setDefaultDirectory(outputDir)
exportDir = chooser.getDirectory()
if not exportDir:
# user canceled dialog
return
# EDF parameters
params = Parameters()
params.setQualitySettings(params.QUALITY_HIGH)
params.nScales = 10
worker = EdfWorker(exportDir,params)
iterateLif(filename,worker)
import glob import os.path import sys from ij import IJ, ImagePlus, ImageStack, WindowManager from ij.io import DirectoryChooser from edfgui import ExtendedDepthOfField, Parameters file_in = sys.argv[1] file_out = sys.argv[2] # EDF parameters params = Parameters() params.setQualitySettings(params.QUALITY_HIGH) params.nScales = 10 # read input image imp = ImagePlus(file_in) # make all-in-focus image edf = ExtendedDepthOfField(imp,params) edf.process() # save output imp = WindowManager.getCurrentImage() IJ.saveAsTiff(imp,file_out) imp.close()
from ij import IJ, ImagePlus, ImageStack, WindowManager
from edf import EdfComplexWavelets, PostProcessing, Tools
from edfgui import ExtendedDepthOfField, Parameters
from imageware import Builder, ImageWare
from optparse import OptionParser
#
REAL_WAVELETS = 2
COMPLEX_WAVELETS = 3
# EDF parameters
params = Parameters()
params.setQualitySettings(params.QUALITY_HIGH)
params.nScales = 10
#
# this is a reproduction of method "process" in edfgui.ExtendedDepthOfField.
#
def process(imp):
isExtended = False
waveletMethod = params.edfMethod == REAL_WAVELETS \
or params.edfMethod == COMPLEX_WAVELETS
stackConverted = None
impConverted = None
impBW = imp
if params.color:
