def test_user_defined_fragments_does_not_include_inactive_fragments(self):
f1 = Fragment.create_with_sequence('Bar', 'aacctaaaattataa')
self.assertEquals(len(Fragment.user_defined_fragments()), 1)
self.assertEquals(Fragment.user_defined_fragments()[0].id, f1.id)
f1.active = False
f1.save()
self.assertEquals(len(Fragment.user_defined_fragments()), 0)
def test_user_defined_fragments_does_not_include_inactive_fragments(self):
f1 = Fragment.create_with_sequence('Bar', 'aacctaaaattataa')
self.assertEquals(len(Fragment.user_defined_fragments()), 1)
self.assertEquals(Fragment.user_defined_fragments()[0].id, f1.id)
f1.active = False
f1.save()
self.assertEquals(len(Fragment.user_defined_fragments()), 0)
def test_user_defined_fragments_does_not_include_genomic_fragment(self):
genome = Genome.create('Foo')
s = 'atggcatattcgcagct'
genome.add_fragment('chrI', s)
f = Fragment.create_with_sequence('Bar', 'aacctaaaattataa')
self.assertEquals(len(Fragment.user_defined_fragments()), 1)
self.assertEquals(Fragment.user_defined_fragments()[0].name, 'Bar')
self.assertEquals(Fragment.user_defined_fragments()[0].id, f.id)
def test_user_defined_fragments_does_not_include_genomic_fragment(self):
genome = Genome.create('Foo')
s = 'atggcatattcgcagct'
genome.add_fragment('chrI', s)
f = Fragment.create_with_sequence('Bar', 'aacctaaaattataa')
self.assertEquals(len(Fragment.user_defined_fragments()), 1)
self.assertEquals(Fragment.user_defined_fragments()[0].name, 'Bar')
self.assertEquals(Fragment.user_defined_fragments()[0].id, f.id)
def test_user_defined_fragments_does_not_include_genomic_fragment(self):
genome = Genome.create("Foo")
s = "atggcatattcgcagct"
genome.add_fragment("chrI", s)
f = Fragment.create_with_sequence("Bar", "aacctaaaattataa")
self.assertEquals(len(Fragment.user_defined_fragments()), 1)
self.assertEquals(Fragment.user_defined_fragments()[0].name, "Bar")
self.assertEquals(Fragment.user_defined_fragments()[0].id, f.id)
def on_get(self, request):
q_parser = RequestParser()
q_parser.add_argument('q', field_type=str, location='get')
q_parser.add_argument('s', field_type=int, location='get', default=0)
q_parser.add_argument('p', field_type=int, location='get', default=100)
args = q_parser.parse_args(request)
s = args['s']
p = args['p']
q = args['q']
p = 200 if p > 200 else p
if q is not None and q.strip() != '':
fragments = Fragment.user_defined_fragments(Q(name__icontains=q), s, s + p)
else:
fragments = Fragment.user_defined_fragments(None, s, s + p)
return [FragmentView.to_dict(fragment) for fragment in fragments]
def on_get(self, request):
q_parser = RequestParser()
q_parser.add_argument("q", field_type=str, location="get")
q_parser.add_argument("s", field_type=int, location="get", default=0)
q_parser.add_argument("p", field_type=int, location="get", default=100)
args = q_parser.parse_args(request)
s = args["s"]
p = args["p"]
q = args["q"]
p = 200 if p > 200 else p
if q is not None and q.strip() != "":
fragments = Fragment.user_defined_fragments(
Q(name__icontains=q), s, s + p)
else:
fragments = Fragment.user_defined_fragments(None, s, s + p)
return [FragmentView.to_dict(fragment) for fragment in fragments]
def on_get(self, request):
q_parser = RequestParser()
q_parser.add_argument('q', field_type=str, location='get')
q_parser.add_argument('s', field_type=int, location='get', default=0)
q_parser.add_argument('p', field_type=int, location='get', default=100)
args = q_parser.parse_args(request)
s = args['s']
p = args['p']
q = args['q']
p = 200 if p > 200 else p
if q is not None and q.strip() != '':
fragments = Fragment.user_defined_fragments(
Q(name__icontains=q), s, s + p)
else:
fragments = Fragment.user_defined_fragments(None, s, s + p)
return [FragmentView.to_dict(fragment) for fragment in fragments]
