def test_crossref_xml_to_disk(self):
"""test writing to disk for test coverage and also not pass crossref_config"""
article_xml_file = "up-sta-example.xml"
crossref_xml_file = "crossref-606-20170717071707.xml"
crossref_config = None
pub_date = DEFAULT_PUB_DATE
file_path = TEST_DATA_PATH + article_xml_file
# build the article object
articles = generate.build_articles_for_crossref([file_path])
# generate and write to disk
generate.crossref_xml_to_disk(
articles,
crossref_config,
pub_date,
False,
"journal",
pretty=True,
indent="\t",
)
# check the output matches
expected_output = read_file_content(TEST_DATA_PATH + crossref_xml_file)
if sys.version_info < (3, 8):
# pre Python 3.8 tag attributes are in a different order
expected_output = replace_namespaces(expected_output)
generated_output = read_file_content(generate.TMP_DIR +
crossref_xml_file)
self.assertEqual(generated_output, expected_output)
def test_generate(self):
for (
article_xml_file,
crossref_xml_file,
config_section,
pub_date,
) in self.passes:
file_path = TEST_DATA_PATH + article_xml_file
articles = generate.build_articles_for_crossref([file_path])
crossref_config = None
if config_section:
crossref_config = create_crossref_config(config_section)
# generate pretty XML
crossref_xml = generate.crossref_xml(articles,
crossref_config,
pub_date,
False,
pretty=True,
indent="\t")
model_crossref_xml = read_file_content(TEST_DATA_PATH +
crossref_xml_file)
if sys.version_info < (3, 8):
# pre Python 3.8 tag attributes are in a different order
model_crossref_xml = replace_namespaces(model_crossref_xml)
self.assertEqual(
crossref_xml,
model_crossref_xml.decode("utf-8"),
"Failed parse test on file %s" % article_xml_file,
)
def test_parse_do_no_pass_pub_date(self):
"""
For test coverage build a crossrefXML object without passing in a pub_date
"""
article_xml_file = "elife_poa_e02725.xml"
file_path = TEST_DATA_PATH + article_xml_file
articles = generate.build_articles_for_crossref([file_path])
crossref_config = create_crossref_config("elife")
crossref_object = generate.CrossrefXML(articles, crossref_config, None,
True)
self.assertIsNotNone(crossref_object.pub_date)
self.assertIsNotNone(crossref_object.generated)
self.assertIsNotNone(
[tag for tag in crossref_object.root.iter() if tag is Comment])
self.assertIsNotNone(crossref_object.output_xml())
def crossref_convert(file_path):
if not file_path:
return None
config_section = 'elife'
try:
articles = generate.build_articles_for_crossref([file_path])
except:
# parsing failed somehow
return None
crossref_config = None
#if config_section:
# crossref_config = parse_raw_config(raw_config(config_section))
crossref_xml_object = generate.build_crossref_xml(articles, crossref_config)
crossref_xml = crossref_xml_object.output_xml(pretty=True, indent="\t")
return crossref_xml
def test_generate_jats_abstract_face_markup(self):
"""
For coverage test JATS and inline output by overriding the config
"""
article_xml_file = "elife-16988-v1.xml"
file_path = TEST_DATA_PATH + article_xml_file
articles = generate.build_articles_for_crossref([file_path])
crossref_config = create_crossref_config("elife")
# override config values
crossref_config["jats_abstract"] = True
crossref_config["face_markup"] = True
# create the Crossref XML
crossref_object = generate.CrossrefXML(articles, crossref_config, None,
True)
# Check for some tags we expect to find in the output
self.assertTrue("<jats:italic>" in crossref_object.output_xml())
self.assertTrue("</b>" in crossref_object.output_xml())
XML_FILES.append([
"tests/test_data/elife-16988-v1.xml", "elife", DEFAULT_PUB_DATE, False
])
XML_FILES.append([
"tests/test_data/elife-11134-v2.xml", "elife", DEFAULT_PUB_DATE, False
])
XML_FILES.append([
"tests/test_data/elife-00508-v1.xml", "elife", DEFAULT_PUB_DATE, False
])
XML_FILES.append(
["tests/test_data/cstp77-jats.xml", "cstp", DEFAULT_PUB_DATE, False])
XML_FILES.append([
"tests/test_data/bmjopen-4-e003269.xml", "bmjopen", DEFAULT_PUB_DATE,
False
])
XML_FILES.append(
["tests/test_data/up-sta-example.xml", None, DEFAULT_PUB_DATE, False])
for xml_file, config_section, pub_date, add_comment in XML_FILES:
generate.TMP_DIR = "tests/test_data"
articles = generate.build_articles_for_crossref([xml_file])
crossref_config = parse_raw_config(raw_config(config_section))
generate.crossref_xml_to_disk(
articles,
crossref_config,
pub_date,
add_comment,
"journal",
pretty=True,
indent="\t",
)