def test_lebesgue_measure_raises():
# upper bound smaller than lower bound
wrong_bounds = [(-1, 1), (0, -2)]
with pytest.raises(ValueError):
LebesgueMeasure.from_bounds(bounds=wrong_bounds)
# empty domain
wrong_bounds = []
with pytest.raises(ValueError):
LebesgueMeasure.from_bounds(bounds=wrong_bounds)
def test_bounded_bq_raises(gpy_model):
gpy_model, _ = gpy_model
measure = LebesgueMeasure.from_bounds(gpy_model.X.shape[1] * [(0, 1)],
normalized=False)
qrbf = QuadratureRBFLebesgueMeasure(RBFGPy(gpy_model.kern),
measure=measure)
base_gp_wrong_kernel = BaseGaussianProcessGPy(kern=qrbf,
gpy_model=gpy_model)
# wrong kernel embedding
with pytest.raises(ValueError):
BoundedBayesianQuadrature(
base_gp=base_gp_wrong_kernel,
X=base_gp_wrong_kernel.X,
Y=base_gp_wrong_kernel.Y,
lower_bound=np.min(base_gp_wrong_kernel.Y) - 0.5,
)
# both upper and lower bound are given
with pytest.raises(ValueError):
BoundedBayesianQuadrature(
base_gp=base_gp_wrong_kernel,
X=base_gp_wrong_kernel.X,
Y=base_gp_wrong_kernel.Y,
lower_bound=np.min(base_gp_wrong_kernel.Y) - 0.5,
upper_bound=np.min(base_gp_wrong_kernel.Y) - 0.5,
)
# no bound is given
with pytest.raises(ValueError):
BoundedBayesianQuadrature(base_gp=base_gp_wrong_kernel,
X=base_gp_wrong_kernel.X,
Y=base_gp_wrong_kernel.Y)
def model_lebesgue_normalized(gpy_model):
measure = LebesgueMeasure.from_bounds(bounds=gpy_model.X.shape[1] *
[(-1, 2)],
normalized=True)
qrbf = QuadratureRBFLebesgueMeasure(RBFGPy(gpy_model.kern), measure)
basegp = BaseGaussianProcessGPy(kern=qrbf, gpy_model=gpy_model)
return VanillaBayesianQuadrature(base_gp=basegp,
X=gpy_model.X,
Y=gpy_model.Y)
def test_brownian_qkernel_raises():
# measure has wrong dimensionality
wrong_bounds = [(1, 2), (1, 2)]
measure = LebesgueMeasure.from_bounds(bounds=wrong_bounds)
with pytest.raises(ValueError):
QuadratureBrownianLebesgueMeasure(BrownianGPy(GPy.kern.Brownian()),
measure)
# bounds are negative
wrong_bounds = [(-1, 2)]
measure = LebesgueMeasure.from_bounds(bounds=wrong_bounds)
with pytest.raises(ValueError):
QuadratureBrownianLebesgueMeasure(BrownianGPy(GPy.kern.Brownian()),
measure)
# bounds are smaller thn offset (product kernel)
offset = -2
wrong_bounds = [(offset - 1, offset + 1), (offset + 1, offset + 2)]
measure = LebesgueMeasure.from_bounds(bounds=wrong_bounds)
with pytest.raises(ValueError):
QuadratureProductBrownianLebesgueMeasure(
ProductBrownianGPy(input_dim=2, offset=offset), measure)
def test_create_emukit_model_from_gpy_model_raises_warns():
input_dim = 2
gpy_kernel = GPy.kern.RBF(input_dim=input_dim)
gpy_model = GPy.models.GPRegression(kernel=gpy_kernel,
X=np.ones([3, input_dim]),
Y=np.ones([3, 1]))
bounds = input_dim * [(0, 1)]
measure = LebesgueMeasure.from_bounds(bounds=bounds)
# Neither measure nor bounds given
with pytest.raises(ValueError):
create_emukit_model_from_gpy_model(gpy_model=gpy_model)
# both measure and bounds are given. Bounds will be ignored.
with pytest.warns(UserWarning):
create_emukit_model_from_gpy_model(gpy_model=gpy_model,
integral_bounds=bounds,
measure=measure)
def test_base_gp_gpy_raises(gpy_prodbrownian):
incompatible_offset = -3
n_dim = 2
dat = data(n_dim=n_dim)
kern = ProductBrownianGPy(variance=1.0,
input_dim=n_dim,
offset=incompatible_offset)
measure = LebesgueMeasure.from_bounds(bounds=n_dim * [(0, 1)])
qkern = QuadratureProductBrownianLebesgueMeasure(brownian_kernel=kern,
measure=measure)
# this GPy model and hence the emukit base_gp wrapper are not compatible with the kernel wrapper
# for offsets other than zero.
gpy_model = GPy.models.GPRegression(kernel=kern.gpy_brownian,
X=dat[0],
Y=dat[1])
with pytest.raises(ValueError):
BaseGaussianProcessGPy(kern=qkern, gpy_model=gpy_model)
def loop():
init_size = 5
x_init = np.random.rand(init_size, 2)
y_init = np.random.rand(init_size, 1)
bounds = [(-1, 1), (0, 1)]
gpy_model = GPy.models.GPRegression(X=x_init,
Y=y_init,
kernel=GPy.kern.RBF(
input_dim=x_init.shape[1],
lengthscale=1.0,
variance=1.0))
emukit_measure = LebesgueMeasure.from_bounds(bounds, normalized=False)
emukit_qrbf = QuadratureRBFLebesgueMeasure(RBFGPy(gpy_model.kern),
measure=emukit_measure)
emukit_model = BaseGaussianProcessGPy(kern=emukit_qrbf,
gpy_model=gpy_model)
emukit_method = VanillaBayesianQuadrature(base_gp=emukit_model,
X=x_init,
Y=y_init)
emukit_loop = VanillaBayesianQuadratureLoop(model=emukit_method)
return emukit_loop, init_size, x_init, y_init
class DataLebesgueNormalizedMeasure:
D = 2
bounds = [(-1, 2), (0, 1)]
volume = 3
measure = LebesgueMeasure(domain=BoxDomain(bounds=bounds), normalized=True)
dat_bounds = bounds
def get_lebesgue_normalized_qprodbrownian():
dat = DataBoxPositiveDomain()
measure = LebesgueMeasure.from_bounds(bounds=dat.bounds, normalized=True)
qkern = QuadratureProductBrownianLebesgueMeasure(
EmukitProductBrownian().kern, measure=measure)
return qkern, dat
def get_lebesgue_normalized_qmatern52():
dat = DataBox()
measure = LebesgueMeasure.from_bounds(bounds=dat.bounds, normalized=True)
qkern = QuadratureProductMatern52LebesgueMeasure(
EmukitProductMatern52().kern, measure=measure)
return qkern, dat
def get_lebesgue_normalized_qrbf():
dat = DataBox()
measure = LebesgueMeasure.from_bounds(bounds=dat.bounds, normalized=True)
qkern = QuadratureRBFLebesgueMeasure(EmukitRBF().kern, measure=measure)
return qkern, dat
def get_lebesgue_qbrownian():
dat = DataIntervalPositiveDomain()
measure = LebesgueMeasure.from_bounds(bounds=dat.bounds, normalized=False)
qkern = QuadratureBrownianLebesgueMeasure(EmukitBrownian().kern,
measure=measure)
return qkern, dat
def measure_lebesgue(n_dim: int):
return LebesgueMeasure.from_bounds(bounds=n_dim * [(0, 1)])
