def get_taxonomy_results():
"""Get list of taxonomy results.
This function returns the description about the possible results
accessible via the taxon portal. Each taxonomy result is described with a
short description"""
taxo_results = enasearch.get_taxonomy_results(verbose=False)
print_simple_dict(taxo_results)
def test_get_taxonomy_results():
"""Test get_taxonomy_results function"""
results = enasearch.get_taxonomy_results(verbose=False)
exp_taxo_results = [
'sequence_release', 'sequence_update', 'coding_release',
'coding_update', 'noncoding_release', 'noncoding_update',
'sample', 'study', 'analysis', 'analysis_study', 'read_run',
'read_experiment', 'read_study', 'read_trace']
assert cmp(results.keys(), exp_taxo_results)
def write_taxonomy_results():
"""
Write the possible taxonomy results
"""
s = '%s<xml name="taxonomy_results">\n' % (spaces)
fields = enasearch.get_taxonomy_results(verbose=False)
for f in fields:
s += '%s<option value="%s">%s</option>\n' % (2 * spaces, f, fields[f]['description'])
s += '%s</xml>\n' % (spaces)
return s
def get_taxonomy_results():
""" Return the list of taxonomy results in ENA """
taxo_results = enasearch.get_taxonomy_results(verbose=False)
print_simple_dict(taxo_results)