def __init__(self, rows=3, cols=3, colFiled=False,
rowFixed=False, parent=None):
super(Table, self).__init__(rows, cols, parent)
self._menu = _TableMenu(self)
self._colFixed = colFiled
self._rowFixed = rowFixed
self._dialogs = Dialogs()
self._path = None
# self.setHorizontalHeader(_Header(QtCore.Qt.Horizontal, self))
self.setCurrentCell(0, 0)
self.currentCellChanged.connect(self._ifAtBorderAddRow) # )
def __init__(self, imageDisplay):
Tool.__init__(self, imageDisplay)
self._dialogs = Dialogs()
ftypes = """Portable Network Graphics (*.png)
Windows bitmaps (*.bmp *.dib)
JPEG files (*.jpeg *.jpg *.jpe)
JPEG 2000 files (*.jp2)
Portable image format (*.pbm *.pgm *.ppm)
Sun rasters (*.sr *.ras)
TIFF files (*.tiff *.tif)"""
self.engine = {'normal image':
(self.exportCV2,
ftypes),
'32bit floating-point TIFF file':
(self.exportFTiff,
'TIFF file (*.tiff)'),
'rendered':
(self.exportRendered,
ftypes),
'Numpy array':
(self.exportNumpy,
'Numpy array (*.npy)'),
'Txt file':
(lambda: self.exportNumpy(np.savetxt),
'Text file (*.txt)'),
}
pa = self.setParameterMenu()
self.pExportAll = pa.addChild({
'name': 'export all image layers',
'type': 'bool',
'value': False})
self.pEngine = pa.addChild({
'name': 'Type',
'type': 'list',
'value': 'normal image',
'limits': list(self.engine.keys()),
'tip': '''normal image: export the original image array
rendered: export the current display view'''})
self.pRange = self.pEngine.addChild({
'name': 'Range',
'type': 'list',
'value': 'current',
'limits': ['0-max', 'min-max', 'current'],
'visible': True})
self.pDType = self.pEngine.addChild({
'name': 'Bit depth',
'type': 'list',
'value': '16 bit',
'limits': ['8 bit', '16 bit'],
'visible': True})
self.pDType.sigValueChanged.connect(self._pDTypeChanged)
# self.pCutNegativeValues = self.pEngine.addChild({
# 'name': 'Cut negative values',
# 'type': 'bool',
# 'value':False,
# 'visible':True})
self.pStretchValues = self.pEngine.addChild({
'name': 'Stretch values',
'type': 'bool',
'value': True,
'visible': True})
self.pOnlyImage = self.pEngine.addChild({
'name': 'Only image',
'type': 'bool',
'value': False,
'tip': 'True - export only the shown image - excluding background and axes',
'visible': False})
self.pEngine.sigValueChanged.connect(self._pEngineChanged)
self.pResize = pa.addChild({
'name': 'Resize',
'type': 'bool',
'value': False})
self.pAspectRatio = self.pResize.addChild({
'name': 'Keep Aspect Ratio',
'type': 'bool',
'value': True,
'visible': False})
self.pWidth = self.pResize.addChild({
'name': 'Width',
'type': 'int',
'value': 0,
'visible': False})
self.pWidth.sigValueChanged.connect(self._pWidthChanged)
self.pHeight = self.pResize.addChild({
'name': 'Height',
'type': 'int',
'value': 0,
'visible': False})
self.pHeight.sigValueChanged.connect(self._pHeightChanged)
self.pResize.addChild({
'name': 'Reset',
'type': 'action',
'visible': False}).sigActivated.connect(self._pResetChanged)
self.pResize.sigValueChanged.connect(lambda param, value:
[ch.show(value) for ch in param.children()])
self.pPath = pa.addChild({
'name': 'path',
'type': 'str',
'value': ''})
pChoosePath = self.pPath.addChild({
'name': 'choose',
'type': 'action'})
pChoosePath.sigActivated.connect(self._pChoosePathChanged)
self._menu.aboutToShow.connect(self._updateOutputSize)
self._menu.aboutToShow.connect(self._updateDType)
class SaveToFile(Tool):
'''
Save the display image to file
'''
icon = 'export.svg'
def __init__(self, imageDisplay):
Tool.__init__(self, imageDisplay)
self._dialogs = Dialogs()
ftypes = """Portable Network Graphics (*.png)
Windows bitmaps (*.bmp *.dib)
JPEG files (*.jpeg *.jpg *.jpe)
JPEG 2000 files (*.jp2)
Portable image format (*.pbm *.pgm *.ppm)
Sun rasters (*.sr *.ras)
TIFF files (*.tiff *.tif)"""
self.engine = {'normal image':
(self.exportCV2,
ftypes),
'32bit floating-point TIFF file':
(self.exportFTiff,
'TIFF file (*.tiff)'),
'rendered':
(self.exportRendered,
ftypes),
'Numpy array':
(self.exportNumpy,
'Numpy array (*.npy)'),
'Txt file':
(lambda: self.exportNumpy(np.savetxt),
'Text file (*.txt)'),
}
pa = self.setParameterMenu()
self.pExportAll = pa.addChild({
'name': 'export all image layers',
'type': 'bool',
'value': False})
self.pEngine = pa.addChild({
'name': 'Type',
'type': 'list',
'value': 'normal image',
'limits': list(self.engine.keys()),
'tip': '''normal image: export the original image array
rendered: export the current display view'''})
self.pRange = self.pEngine.addChild({
'name': 'Range',
'type': 'list',
'value': 'current',
'limits': ['0-max', 'min-max', 'current'],
'visible': True})
self.pDType = self.pEngine.addChild({
'name': 'Bit depth',
'type': 'list',
'value': '16 bit',
'limits': ['8 bit', '16 bit'],
'visible': True})
self.pDType.sigValueChanged.connect(self._pDTypeChanged)
# self.pCutNegativeValues = self.pEngine.addChild({
# 'name': 'Cut negative values',
# 'type': 'bool',
# 'value':False,
# 'visible':True})
self.pStretchValues = self.pEngine.addChild({
'name': 'Stretch values',
'type': 'bool',
'value': True,
'visible': True})
self.pOnlyImage = self.pEngine.addChild({
'name': 'Only image',
'type': 'bool',
'value': False,
'tip': 'True - export only the shown image - excluding background and axes',
'visible': False})
self.pEngine.sigValueChanged.connect(self._pEngineChanged)
self.pResize = pa.addChild({
'name': 'Resize',
'type': 'bool',
'value': False})
self.pAspectRatio = self.pResize.addChild({
'name': 'Keep Aspect Ratio',
'type': 'bool',
'value': True,
'visible': False})
self.pWidth = self.pResize.addChild({
'name': 'Width',
'type': 'int',
'value': 0,
'visible': False})
self.pWidth.sigValueChanged.connect(self._pWidthChanged)
self.pHeight = self.pResize.addChild({
'name': 'Height',
'type': 'int',
'value': 0,
'visible': False})
self.pHeight.sigValueChanged.connect(self._pHeightChanged)
self.pResize.addChild({
'name': 'Reset',
'type': 'action',
'visible': False}).sigActivated.connect(self._pResetChanged)
self.pResize.sigValueChanged.connect(lambda param, value:
[ch.show(value) for ch in param.children()])
self.pPath = pa.addChild({
'name': 'path',
'type': 'str',
'value': ''})
pChoosePath = self.pPath.addChild({
'name': 'choose',
'type': 'action'})
pChoosePath.sigActivated.connect(self._pChoosePathChanged)
self._menu.aboutToShow.connect(self._updateOutputSize)
self._menu.aboutToShow.connect(self._updateDType)
def _pChoosePathChanged(self, param):
self._choosePath()
self.activate()
def _pResetChanged(self):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
self._menu.aboutToShow.connect(self._updateOutputSize)
self._updateOutputSize()
def _pEngineChanged(self, param, val):
# self.pCutNegativeValues.show(val == 'normal image')
self.pStretchValues.show(val == 'normal image')
self.pOnlyImage.show(val == 'rendered')
self.pRange.show(val == 'normal image')
self.pDType.show(val == 'normal image')
def _updateOutputSize(self):
if self.pEngine.value() == 'rendered':
size = self.display.size()
w = size.width()
h = size.height()
else:
w, h = self.display.widget.image.shape[1:3]
self.aspectRatio = h / w
self.pWidth.setValue(w, blockSignal=self._pWidthChanged)
self.pHeight.setValue(h, blockSignal=self._pHeightChanged)
def _updateDType(self):
w = self.display.widget
if (w.levelMax - w.levelMin) > 255:
self.pDType.setValue('16 bit', blockSignal=self._pDTypeChanged)
else:
self.pDType.setValue('8 bit', blockSignal=self._pDTypeChanged)
def _pDTypeChanged(self):
# dont change dtype automatically anymore as soon as user changed param
try:
self._menu.aboutToShow.disconnect(self._updateDType)
except:
pass
def _pHeightChanged(self, param, value):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
if self.pAspectRatio.value():
self.pWidth.setValue(int(round(value / self.aspectRatio)),
blockSignal=self._pWidthChanged)
def _pWidthChanged(self, param, value):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
if self.pAspectRatio.value():
self.pHeight.setValue(int(round(value * self.aspectRatio)),
blockSignal=self._pHeightChanged)
def _choosePath(self):
filt = self.engine[self.pEngine.value()][1]
kwargs = dict(filter=filt,
# selectedFilter='png' #this option is not supported in PyQt5 any more
)
f = self.display.filenames[0]
if f is not None:
kwargs['directory'] = f.dirname()
path = self._dialogs.getSaveFileName(**kwargs)
if path:
self.pPath.setValue(path)
def activate(self):
# CHECK PATH
if not self.pPath.value():
self._choosePath()
if not self.pPath.value():
raise Exception('define a file path first!')
self.engine[self.pEngine.value()][0]()
def exportRendered(self):
'''
Use QPixmap.grabWidget(display) to save the image
'''
d = self.display
try:
# get instance back from weakref
d = d.__repr__.__self__
except:
pass
# PREPARE LAYOUT:
d.release()
d.hideTitleBar()
if self.pResize.value():
d.resize(self.pWidth.value(), self.pHeight.value())
# SAVE:
path = self.pPath.value()
def grabAndSave(path2):
if self.pOnlyImage.value():
item = d.widget.imageItem
b = item.sceneBoundingRect().toRect()
w = d.widget.grab(b)#QtGui.QPixmap.grabWidget(d.widget, b)
else:
w = d.grab()#QtGui.QPixmap.grabWidget(d)
w.save(path2)
print('Saved image under %s' % path2)
if self.pExportAll.value():
# EACH LAYER SEPARATE
old_i = d.widget.currentIndex
for i in range(len(d.widget.image)):
path2 = path.replace('.', '__%s.' % i)
d.widget.setCurrentIndex(i)
grabAndSave(path2)
d.widget.setCurrentIndex(old_i)
else:
grabAndSave(path)
# RESET LAYOUT:
d.showTitleBar()
d.embedd()
def exportNumpy(self, method=np.save):
'''
Export as a numpy array *.npy
'''
path = self.pPath.value()
w = self.display.widget
image = w.image
if not self.pExportAll.value():
image = image[w.currentIndex]
method(path, image)
print('Saved image under %s' % path)
def _export(self, fn):
def export(img, path):
if self.pResize.value():
img = resize(img, (self.pWidth.value(), self.pHeight.value()))
fn(path, img)
print('Saved image under %s' % path)
w = self.display.widget
image = w.image
path = self.pPath.value()
if self.pExportAll.value():
for n, img in enumerate(image):
path2 = path.replace('.', '__%s.' % n)
export(img, path2)
else:
image = image[w.currentIndex]
export(image, path)
def exportFTiff(self):
'''
Use pil.Image.fromarray(data).save() to save the image array
'''
def fn(path, img):
imwrite(path, transpose(img), dtype=float)
return self._export(fn)
def exportCV2(self):
'''
Use cv2.imwrite() to save the image array
'''
w = self.display.widget
def fn(path, img):
r = self.pRange.value()
if r == '0-max':
r = (0, w.levelMax)
elif r == 'min-max':
r = (w.levelMin, w.levelMax)
else: # 'current'
r = w.ui.histogram.getLevels()
int_img = toUIntArray(img,
# cutNegative=self.pCutNegativeValues.value(),
cutHigh=~self.pStretchValues.value(),
range=r,
dtype={'8 bit': np.uint8,
'16 bit': np.uint16}[self.pDType.value()])
if isColor(int_img):
int_img = cv2.cvtColor(int_img, cv2.COLOR_RGB2BGR)
cv2.imwrite(path, transpose(int_img))
return self._export(fn)
def __init__(self,
title='PYZ-Launcher',
icon=None,
start_script=None,
left_header=None,
right_header=None,
file_type='pyz'
):
self.dialogs = Dialogs()
_path = PathStr.getcwd()
_default_text_color = '#3c3c3c'
if icon is None:
icon = os.path.join(_path, 'media', 'launcher_logo.svg')
if start_script is None:
start_script = os.path.join(_path, 'test_session.py')
if left_header is None:
_description = "<a href=%s style='color: %s'>%s</a>" % (
appbase.__url__, _default_text_color, appbase.__description__)
left_header = """<b>%s</b><br>
version
<a href=%s style='color: %s'>%s</a><br>
autor
<a href=mailto:%s style='color: %s'>%s</a> """ % ( # text-decoration:underline
_description,
os.path.join(_path, 'media', 'recent_changes.txt'),
_default_text_color,
appbase.__version__,
appbase.__email__,
_default_text_color,
appbase.__author__
)
if right_header is None:
# if no header is given, list all pdfs in folder media as link
d = _path
right_header = ''
for f in os.listdir(os.path.join(d, 'media')):
if f.endswith('.pdf'):
_guidePath = os.path.join(d, 'media', f)
right_header += "<a href=%s style='color: %s'>%s</a><br>" % (
_guidePath, _default_text_color, f[:-4])
right_header = right_header[:-4]
QtWidgets.QMainWindow.__init__(self)
self._start_script = start_script
self.setWindowTitle(title)
self.setWindowIcon(QtGui.QIcon(icon))
self.resize(900, 500)
# BASE STRUTURE
area = QtWidgets.QWidget()
self.setCentralWidget(area)
layout = QtWidgets.QVBoxLayout()
area.setLayout(layout)
#header = QtWidgets.QHBoxLayout()
# layout.addLayout(header)
# grab the default text color of a qlabel to color all links from blue to it:
# LEFT TEXT
info = QtWidgets.QLabel(left_header)
info.setOpenExternalLinks(True)
# LOGO
header = QtWidgets.QWidget()
header.setFixedHeight(70)
headerlayout = QtWidgets.QHBoxLayout()
header.setLayout(headerlayout)
logo = QtSvg.QSvgWidget(icon)
logo.setFixedWidth(50)
logo.setFixedHeight(50)
headerlayout.addWidget(logo)
headerlayout.addWidget(info)
layout.addWidget(header)
# RIGHT_HEADER
userGuide = QtWidgets.QLabel(right_header)
userGuide.setOpenExternalLinks(True)
userGuide.setAlignment(QtCore.Qt.AlignTop | QtCore.Qt.AlignRight)
headerlayout.addWidget(userGuide)
# ROOT-PATH OF THE SESSIONS
rootLayout = QtWidgets.QHBoxLayout()
rootFrame = QtWidgets.QFrame()
rootFrame.setFrameStyle(
QtWidgets.QFrame.StyledPanel | QtWidgets.QFrame.Plain)
rootFrame.setFixedHeight(45)
rootFrame.setLineWidth(0)
rootFrame.setLayout(rootLayout)
layout.addWidget(rootFrame)
self.rootDir = QtWidgets.QLabel()
self.rootDir.setAutoFillBackground(True)
self.rootDir.setStyleSheet("QLabel { background-color: white; }")
# FILE-BROWSER
self.treeView = _TreeView()
self.fileSystemModel = _FileSystemModel(self.treeView, file_type)
self.fileSystemModel.setNameFilters(['*.%s' % file_type])
self.fileSystemModel.setNameFilterDisables(False)
self.treeView.setModel(self.fileSystemModel)
treelayout = QtWidgets.QHBoxLayout()
splitter = QtWidgets.QSplitter(QtCore.Qt.Orientation(1))
self.fileInfo = _PyzInfo(splitter, self.fileSystemModel, self.treeView)
self.treeView.clicked.connect(self.fileInfo.update)
splitter.addWidget(self.treeView)
splitter.addWidget(self.fileInfo)
treelayout.addWidget(splitter)
layout.addLayout(treelayout)
# get last root-path
self._path = PathStr('')
if CONFIG_FILE:
try:
self._path = PathStr(
open(
CONFIG_FILE,
'r').read().decode('unicode-escape'))
except IOError:
pass # file not existant
if not self._path or not self._path.exists():
msgBox = QtWidgets.QMessageBox()
msgBox.setText("Please choose your projectDirectory.")
msgBox.exec_()
self._changeRootDir()
self.treeView.setPath(self._path)
abspath = os.path.abspath(self._path)
self.rootDir.setText(abspath)
rootLayout.addWidget(self.rootDir)
# GO UPWARDS ROOT-PATH BUTTON
btnUpRootDir = QtWidgets.QPushButton('up')
btnUpRootDir.clicked.connect(self._goUpRootDir)
rootLayout.addWidget(btnUpRootDir)
# DEFINE CURRENT DIR AS ROOT-PATH
btnDefineRootDir = QtWidgets.QPushButton('set')
btnDefineRootDir.clicked.connect(self._defineRootDir)
rootLayout.addWidget(btnDefineRootDir)
# SELECT ROOT-PATH BUTTON
buttonRootDir = QtWidgets.QPushButton('select')
buttonRootDir.clicked.connect(self._changeRootDir)
rootLayout.addWidget(buttonRootDir)
# NEW-BUTTON
if self._start_script:
newButton = QtWidgets.QPushButton('NEW')
newButton.clicked.connect(self._openNew)
layout.addWidget(newButton)
class Table(QtWidgets.QTableWidget):
"""
A QTableWidget with:
* Shortcuts: copy, paste, cut, insert/delete row/column
* Context Menu
* Cell range operations (copy, paste on multiple cells)
* Save/open
* import from clipboard
* dynamic add of new rows and cells when needed
"""
sigPathChanged = QtCore.Signal(object) # file path
def __init__(self, rows=3, cols=3, colFiled=False,
rowFixed=False, parent=None):
super(Table, self).__init__(rows, cols, parent)
self._menu = _TableMenu(self)
self._colFixed = colFiled
self._rowFixed = rowFixed
self._dialogs = Dialogs()
self._path = None
# self.setHorizontalHeader(_Header(QtCore.Qt.Horizontal, self))
self.setCurrentCell(0, 0)
self.currentCellChanged.connect(self._ifAtBorderAddRow) # )
def restore(self, path):
self.clearContents()
text = open(path, 'r').read()
table = self._textToTable(text, ',')
self.importTable(table)
def open(self, path):
if not path:
path = self._dialogs.getOpenFileName(filter='*.csv')
if path:
self.restore(path)
self._setPath(path)
def _setPath(self, path):
self._path = path
self.sigPathChanged.emit(path)
def save(self):
"""
save to file - override last saved file
"""
self.saveAs(self._path)
def table(self):
l = []
for row in range(self.rowCount()):
rowdata = []
for column in range(self.columnCount()):
item = self.item(row, column)
if item is not None:
rowdata.append(
str(item.text()).encode('utf8'))
else:
rowdata.append('')
l.append(rowdata)
return l
def saveAs(self, path):
"""
save to file under given name
"""
if not path:
path = self._dialogs.getSaveFileName(filter='*.csv')
if path:
self._setPath(path)
with open(str(self._path), 'wb') as stream:
writer = csv.writer(stream)
table = self.table()
for row in table:
writer.writerow(row)
def _ifAtBorderAddRow(self, row, column, lastRow, lastColumn):
if row == self.rowCount() - 1:
if not self._rowFixed:
self.setRowCount(row + 2)
if column == self.columnCount() - 1:
if not self._colFixed:
self.setColumnCount(column + 2)
def mousePressEvent(self, event):
mouseBtn = event.button()
if mouseBtn == QtCore.Qt.RightButton:
self._menu.show(event)
super(Table, self).mousePressEvent(event)
def keyPressEvent(self, event):
if event.matches(QtGui.QKeySequence.Copy):
self.copy()
elif event.matches(QtGui.QKeySequence.Cut):
self.copy()
self.delete()
elif event.matches(QtGui.QKeySequence.ZoomIn): # Ctrl+Plus
self.insertBlankCells()
elif event.matches(QtGui.QKeySequence.ZoomOut): # Ctrl+Minus
self.removeBlankCells()
elif event.matches(QtGui.QKeySequence.Delete):
self.delete()
elif event.matches(QtGui.QKeySequence.Paste):
self.paste()
else:
QtWidgets.QTableWidget.keyPressEvent(self, event)
def insertBlankCells(self):
# TODO: insert only cells for selected range
r = self.selectedRanges()
if len(r) > 1:
print('Cannot insert cells on multiple selections')
return
r = r[0]
if r.leftColumn() == r.rightColumn():
self.insertColumn(r.leftColumn())
elif r.leftRow() == r.rightRow():
self.insertRow(r.leftRow())
else:
print('Need one line of rows or columns to insert blank cells')
def removeBlankCells(self):
# TODO: remove only cells for selected range
r = self.selectedRanges()
if len(r) > 1:
print('Cannot remove cells on multiple selections')
return
r = r[0]
if r.leftColumn() == r.rightColumn():
self.removeColumn(r.leftColumn())
elif r.leftRow() == r.rightRow():
self.removeRow(r.leftRow())
else:
print('Need one line of rows or columns to insert blank cells')
def delete(self):
for item in self.selectedItems():
r, c = item.row(), item.column()
self.takeItem(r, c)
self.cleanTable()
def cleanTable(self):
r = self.rowCount()
c = self.columnCount()
# try to remove empty rows:
if not self._rowFixed:
while True:
for col in range(c):
isempty = True
item = self.item(r, col)
if item and item.text():
isempty = False
break
if isempty:
self.setRowCount(r)
if r == 2: # min table resolution:2x2
break
r -= 1
else:
break
# try to remove empty columns:
if not self._colFixed:
while True:
for row in range(r):
isempty = True
item = self.item(row, c)
if item and item.text():
isempty = False
break
if isempty:
self.setColumnCount(c)
if c == 2: # min table resolution:2x2
break
c -= 1
else:
break
def setColumnsFixed(self, value):
self._colFixed = value
def cut(self):
self.copy()
self.delete()
def copy(self):
firstRange = self.selectedRanges()[0]
# deselect all other ranges, to show shat only the first one will
# copied
for otherRange in self.selectedRanges()[1:]:
self.setRangeSelected(otherRange, False)
nCols = firstRange.columnCount()
nRows = firstRange.rowCount()
if not nCols or not nRows:
return
text = ''
lastRow = nRows + firstRange.topRow()
lastCol = nCols + firstRange.leftColumn()
for row in range(firstRange.topRow(), lastRow):
for col in range(firstRange.leftColumn(), lastCol):
item = self.item(row, col)
if item:
text += str(item.text())
if col != lastCol - 1:
text += '\t'
text += '\n'
QtWidgets.QApplication.clipboard().setText(text)
def _textToTable(self, text, separator='\t'):
"""
format csv, [[...]], ((..)) strings to a 2d table
"""
table = None
if text.startswith('[[') or text.startswith('(('):
try:
# maybe it's already formated as a list e.g. "[['1','2'],[...]]"
# check it:
t = eval(text)
# has to be a 2d-list:
if isinstance(t, list) and isinstance(t[0], list):
table = t
except SyntaxError:
# not a valid list
pass
if not table:
# create the list from the clipboard-text
# therefore the text has to be formated like this:
# "1\t2\3\n4\t5\6\n"
table = text.split('\n')
n = 0
while n < len(table):
sline = table[n].split(separator)
if sline != ['']:
table[n] = sline
else:
table.pop(n)
n -= 1
n += 1
return table
@staticmethod
def fromArray(arr):
assert arr.ndim < 3
t = Table()
t.importTable(arr)
return t
@staticmethod
def fromText(text):
t = Table()
table = t._textToTable(text)
if table:
t.importTable(table)
else:
raise Exception('text is no table')
return t
def paste(self):
# get the text from the clipboard
text = str(QtWidgets.QApplication.clipboard().text())
if text:
table = self._textToTable(text)
self.importTable(table)
def importTable(self, table, startRow=None, startCol=None):
if table is not None and len(table):
if startRow is None or startCol is None:
try:
# try to get array to paste in from selection
r = self.selectedRanges()[0]
startRow = r.topRow()
startCol = r.leftColumn()
except IndexError:
startRow = 0
startCol = 0
lastRow = startRow + len(table)
lastCol = startCol + len(table[0])
if not self._rowFixed:
if self.rowCount() < lastRow:
self.setRowCount(lastRow)
if not self._colFixed:
if self.columnCount() < lastCol:
self.setColumnCount(lastCol)
for row, line in enumerate(table):
for col, text in enumerate(line):
r, c = row + startRow, col + startCol
self.setItemText(r, c, str(text))
def setItemText(self, row, col, text):
item = self.item(row, col)
if not item:
item = QtWidgets.QTableWidgetItem()
self.setItem(row, col, item)
item.setText(text)
class SaveToFile(Tool):
'''
Save the display image to file
'''
icon = 'export.svg'
def __init__(self, imageDisplay):
Tool.__init__(self, imageDisplay)
self._dialogs = Dialogs()
ftypes = """Portable Network Graphics (*.png)
Windows bitmaps (*.bmp *.dib)
JPEG files (*.jpeg *.jpg *.jpe)
JPEG 2000 files (*.jp2)
Portable image format (*.pbm *.pgm *.ppm)
Sun rasters (*.sr *.ras)
TIFF files (*.tiff *.tif)"""
self.engine = {
'normal image': (self.exportCV2, ftypes),
'32bit floating-point TIFF file':
(self.exportFTiff, 'TIFF file (*.tiff)'),
'rendered': (self.exportRendered, ftypes),
'Numpy array': (self.exportNumpy, 'Numpy array (*.npy)'),
'Txt file':
(lambda: self.exportNumpy(np.savetxt), 'Text file (*.txt)'),
}
pa = self.setParameterMenu()
self.pExportAll = pa.addChild({
'name': 'export all image layers',
'type': 'bool',
'value': False
})
self.pEngine = pa.addChild({
'name':
'Type',
'type':
'list',
'value':
'normal image',
'limits':
self.engine.keys(),
'tip':
'''normal image: export the original image array
rendered: export the current display view'''
})
self.pRange = self.pEngine.addChild({
'name':
'Range',
'type':
'list',
'value':
'current',
'limits': ['0-max', 'min-max', 'current'],
'visible':
True
})
self.pDType = self.pEngine.addChild({
'name': 'Bit depth',
'type': 'list',
'value': '16 bit',
'limits': ['8 bit', '16 bit'],
'visible': True
})
self.pDType.sigValueChanged.connect(self._pDTypeChanged)
# self.pCutNegativeValues = self.pEngine.addChild({
# 'name': 'Cut negative values',
# 'type': 'bool',
# 'value':False,
# 'visible':True})
self.pStretchValues = self.pEngine.addChild({
'name': 'Stretch values',
'type': 'bool',
'value': True,
'visible': True
})
self.pOnlyImage = self.pEngine.addChild({
'name': 'Only image',
'type': 'bool',
'value': False,
'tip':
'True - export only the shown image - excluding background and axes',
'visible': False
})
self.pEngine.sigValueChanged.connect(self._pEngineChanged)
self.pResize = pa.addChild({
'name': 'Resize',
'type': 'bool',
'value': False
})
self.pAspectRatio = self.pResize.addChild({
'name': 'Keep Aspect Ratio',
'type': 'bool',
'value': True,
'visible': False
})
self.pWidth = self.pResize.addChild({
'name': 'Width',
'type': 'int',
'value': 0,
'visible': False
})
self.pWidth.sigValueChanged.connect(self._pWidthChanged)
self.pHeight = self.pResize.addChild({
'name': 'Height',
'type': 'int',
'value': 0,
'visible': False
})
self.pHeight.sigValueChanged.connect(self._pHeightChanged)
self.pResize.addChild({
'name': 'Reset',
'type': 'action',
'visible': False
}).sigActivated.connect(self._pResetChanged)
self.pResize.sigValueChanged.connect(
lambda param, value: [ch.show(value) for ch in param.children()])
self.pPath = pa.addChild({'name': 'path', 'type': 'str', 'value': ''})
pChoosePath = self.pPath.addChild({'name': 'choose', 'type': 'action'})
pChoosePath.sigActivated.connect(self._pChoosePathChanged)
self._menu.aboutToShow.connect(self._updateOutputSize)
self._menu.aboutToShow.connect(self._updateDType)
def _pChoosePathChanged(self, param):
self._choosePath()
self.activate()
def _pResetChanged(self):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
self._menu.aboutToShow.connect(self._updateOutputSize)
self._updateOutputSize()
def _pEngineChanged(self, param, val):
# self.pCutNegativeValues.show(val == 'normal image')
self.pStretchValues.show(val == 'normal image')
self.pOnlyImage.show(val == 'rendered')
self.pRange.show(val == 'normal image')
self.pDType.show(val == 'normal image')
def _updateOutputSize(self):
if self.pEngine.value() == 'rendered':
size = self.display.size()
w = size.width()
h = size.height()
else:
w, h = self.display.widget.image.shape[1:3]
self.aspectRatio = h / float(w)
self.pWidth.setValue(w, blockSignal=self._pWidthChanged)
self.pHeight.setValue(h, blockSignal=self._pHeightChanged)
def _updateDType(self):
w = self.display.widget
if (w.levelMax - w.levelMin) > 255:
self.pDType.setValue('16 bit', blockSignal=self._pDTypeChanged)
else:
self.pDType.setValue('8 bit', blockSignal=self._pDTypeChanged)
def _pDTypeChanged(self):
#dont change dtype automatically anymore as soon as user changed param
try:
self._menu.aboutToShow.disconnect(self._updateDType)
except:
pass
def _pHeightChanged(self, param, value):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
if self.pAspectRatio.value():
self.pWidth.setValue(int(round(value / self.aspectRatio)),
blockSignal=self._pWidthChanged)
def _pWidthChanged(self, param, value):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
if self.pAspectRatio.value():
self.pHeight.setValue(int(round(value * self.aspectRatio)),
blockSignal=self._pHeightChanged)
def _choosePath(self):
filt = self.engine[self.pEngine.value()][1]
kwargs = dict(filter=filt, selectedFilter='png')
f = self.display.filenames[0]
if f is not None:
kwargs['directory'] = f.dirname()
path = self._dialogs.getSaveFileName(**kwargs)
if path and path != '.':
self.pPath.setValue(path)
def activate(self):
#CHECK PATH
if not self.pPath.value():
self._choosePath()
if not self.pPath.value():
raise Exception('define a file path first!')
self.engine[self.pEngine.value()][0]()
def exportRendered(self):
'''
Use QPixmap.grabWidget(display) to save the image
'''
d = self.display
try:
#get instance back from weakref
d = d.__repr__.__self__
except:
pass
#PREPARE LAYOUT:
d.release()
d.hideTitleBar()
if self.pResize.value():
d.resize(self.pWidth.value(), self.pHeight.value())
#SAVE:
path = self.pPath.value()
def grabAndSave(path2):
if self.pOnlyImage.value():
item = d.widget.imageItem
b = item.sceneBoundingRect().toRect()
w = QtGui.QPixmap.grabWidget(d.widget, b)
else:
w = QtGui.QPixmap.grabWidget(d)
w.save(path2)
print 'Saved image under %s' % path2
if self.pExportAll.value():
#EACH LAYER SEPARATE
old_i = d.widget.currentIndex
for i in range(len(d.widget.image)):
path2 = path.replace('.', '__%s.' % i)
d.widget.setCurrentIndex(i)
grabAndSave(path2)
d.widget.setCurrentIndex(old_i)
else:
grabAndSave(path)
#RESET LAYOUT:
d.showTitleBar()
d.embedd()
def exportNumpy(self, method=np.save):
'''
Export as a numpy array *.npy
'''
path = self.pPath.value()
w = self.display.widget
image = w.image
if not self.pExportAll.value():
image = image[w.currentIndex]
method(path, image)
print 'Saved image under %s' % path
def _export(self, fn):
def export(img, path):
if self.pResize.value():
img = resize(img, (self.pWidth.value(), self.pHeight.value()))
fn(path, img)
print 'Saved image under %s' % path
w = self.display.widget
image = w.image
path = self.pPath.value()
if self.pExportAll.value():
for n, img in enumerate(image):
path2 = path.replace('.', '__%s.' % n)
export(img, path2)
else:
image = image[w.currentIndex]
export(image, path)
def exportFTiff(self):
'''
Use pil.Image.fromarray(data).save() to save the image array
'''
def fn(path, img):
Image.fromarray(img.T).save(path)
return self._export(fn)
def exportCV2(self):
'''
Use cv2.imwrite() to save the image array
'''
w = self.display.widget
def fn(path, img):
r = self.pRange.value()
if r == '0-max':
r = (0, w.levelMax)
elif r == 'min-max':
r = (w.levelMin, w.levelMax)
else: #'current'
r = w.ui.histogram.getLevels()
int_img = toUIntArray(
img,
# cutNegative=self.pCutNegativeValues.value(),
cutHigh=~self.pStretchValues.value(),
range=r,
dtype={
'8 bit': np.uint8,
'16 bit': np.uint16
}[self.pDType.value()])
cv2.imwrite(path, out(int_img))
return self._export(fn)
def __init__(self, imageDisplay):
Tool.__init__(self, imageDisplay)
self._dialogs = Dialogs()
ftypes = """Portable Network Graphics (*.png)
Windows bitmaps (*.bmp *.dib)
JPEG files (*.jpeg *.jpg *.jpe)
JPEG 2000 files (*.jp2)
Portable image format (*.pbm *.pgm *.ppm)
Sun rasters (*.sr *.ras)
TIFF files (*.tiff *.tif)"""
self.engine = {
'normal image': (self.exportCV2, ftypes),
'32bit floating-point TIFF file':
(self.exportFTiff, 'TIFF file (*.tiff)'),
'rendered': (self.exportRendered, ftypes),
'Numpy array': (self.exportNumpy, 'Numpy array (*.npy)'),
'Txt file':
(lambda: self.exportNumpy(np.savetxt), 'Text file (*.txt)'),
}
pa = self.setParameterMenu()
self.pExportAll = pa.addChild({
'name': 'export all image layers',
'type': 'bool',
'value': False
})
self.pEngine = pa.addChild({
'name':
'Type',
'type':
'list',
'value':
'normal image',
'limits':
self.engine.keys(),
'tip':
'''normal image: export the original image array
rendered: export the current display view'''
})
self.pRange = self.pEngine.addChild({
'name':
'Range',
'type':
'list',
'value':
'current',
'limits': ['0-max', 'min-max', 'current'],
'visible':
True
})
self.pDType = self.pEngine.addChild({
'name': 'Bit depth',
'type': 'list',
'value': '16 bit',
'limits': ['8 bit', '16 bit'],
'visible': True
})
self.pDType.sigValueChanged.connect(self._pDTypeChanged)
# self.pCutNegativeValues = self.pEngine.addChild({
# 'name': 'Cut negative values',
# 'type': 'bool',
# 'value':False,
# 'visible':True})
self.pStretchValues = self.pEngine.addChild({
'name': 'Stretch values',
'type': 'bool',
'value': True,
'visible': True
})
self.pOnlyImage = self.pEngine.addChild({
'name': 'Only image',
'type': 'bool',
'value': False,
'tip':
'True - export only the shown image - excluding background and axes',
'visible': False
})
self.pEngine.sigValueChanged.connect(self._pEngineChanged)
self.pResize = pa.addChild({
'name': 'Resize',
'type': 'bool',
'value': False
})
self.pAspectRatio = self.pResize.addChild({
'name': 'Keep Aspect Ratio',
'type': 'bool',
'value': True,
'visible': False
})
self.pWidth = self.pResize.addChild({
'name': 'Width',
'type': 'int',
'value': 0,
'visible': False
})
self.pWidth.sigValueChanged.connect(self._pWidthChanged)
self.pHeight = self.pResize.addChild({
'name': 'Height',
'type': 'int',
'value': 0,
'visible': False
})
self.pHeight.sigValueChanged.connect(self._pHeightChanged)
self.pResize.addChild({
'name': 'Reset',
'type': 'action',
'visible': False
}).sigActivated.connect(self._pResetChanged)
self.pResize.sigValueChanged.connect(
lambda param, value: [ch.show(value) for ch in param.children()])
self.pPath = pa.addChild({'name': 'path', 'type': 'str', 'value': ''})
pChoosePath = self.pPath.addChild({'name': 'choose', 'type': 'action'})
pChoosePath.sigActivated.connect(self._pChoosePathChanged)
self._menu.aboutToShow.connect(self._updateOutputSize)
self._menu.aboutToShow.connect(self._updateDType)
from fancywidgets.pyQtBased.SnippingTool import SnippingArea
from fancywidgets import media
var = 0
f = ""
choiceStr = ""
cs = False
wwo = False
tt = True
tf = True
ts = True
iconfolder = PathStr(media.__file__).dirname().join("icons",
"foundation-icon-fonts-3")
dialogs = Dialogs()
class MainWindow(QtWidgets.QMainWindow): # rename
def __init__(self, parent=None):
QtWidgets.QMainWindow.__init__(self, parent)
self.setWindowFlags(Qt.Widget) # allow to use mainwindow as widget
self.text = _TextEdit(self)
self.text.setTabStopWidth(12)
self.setCentralWidget(self.text)
def showToolbar(self, show):
self.text.showToolbarChecked = show
for t in self.findChildren(QtWidgets.QToolBar):
# for t in self.toolbars:
def __init__(self, args, **kwargs):
"""
Args:
first_start_dialog (Optional[bool]):
Show a different dialog for the first start.
name (Optional[str]): The applications name.
type (Optional[str]): The file type to be used for saving sessions.
icon (Optional[str]): Path to the application icon.
"""
QtCore.QObject.__init__(self)
# SESSION CONSTANTS:
self.NAME = kwargs.get('name', __main__.__name__)
self.FTYPE = kwargs.get('ftype', 'pyz')
self.ICON = kwargs.get('icon', None)
# hidden app-preferences folder:
self.dir = PathStr.home().mkdir('.%s' % self.NAME)
self.APP_CONFIG_FILE = self.dir.join('config.txt')
self._tmp_dir_session = None
# session specific options:
self.opts = _Opts({
'maxSessions': 3,
'enableGuiIcons': True,
'writeToShell': True,
'createLog': False,
'debugMode': False,
'autosave': False,
'autosaveIntervalMin': 15,
'server': False,
}, self)
# global options - same for all new and restored sessions:
self.app_opts = {'showCloseDialog': True, 'recent sessions': []}
if not self.APP_CONFIG_FILE.exists():
# allow different first start dialog:
dialog = kwargs.get('first_start_dialog', FirstStart)
f = dialog(self)
f.exec_()
if not f.result():
sys.exit()
# create the config file
with open(self.APP_CONFIG_FILE, 'w') as f:
pass
else:
with open(self.APP_CONFIG_FILE, 'r') as f:
r = f.read()
if r:
self.app_opts.update(eval(r))
self._icons_enabled = False
self.log_file = None
dirname = self.app_opts['recent sessions']
if dirname:
dirname = PathStr(dirname[-1]).dirname()
self.dialogs = Dialogs(dirname)
self.saveThread = _SaveThread()
self._createdAutosaveFile = None
self.tmp_dir_save_session = None
# a work-dir for temp. storage:
# self.tmp_dir_work = PathStr(tempfile.mkdtemp('%s_work' % self.NAME))
pathName = self._inspectArguments(args)
self.setSessionPath(pathName)
if self.opts['createLog']:
self._setupLogFile()
# create connectable stdout and stderr signal:
self.streamOut = StreamSignal('out')
self.streamErr = StreamSignal('err')
self._enableGuiIcons()
# Auto-save timer:
self.timerAutosave = QtCore.QTimer()
self.timerAutosave.timeout.connect(self._autoSave)
self.opts.activate()
# first thing to do after start:
QtCore.QTimer.singleShot(0, self.restoreCurrentState)
class Session(QtCore.QObject):
"""Session management to be accessible in QtWidgets.QApplication.instance().session
* extract the opened (as pyz-zipped) session in a temp folder
* create 2nd temp-folder for sessions to be saved
* send a close signal to all child structures when exit
* write a log file with all output
* enable icons in menus of gnome-sessions [linux only]
* gives option of debug mode
"""
# sigPathChanged = QtCore.Signal(object) #path
sigSave = QtCore.Signal(object) # state dict
sigRestore = QtCore.Signal(object) # state dict
def __init__(self, args, **kwargs):
"""
Args:
first_start_dialog (Optional[bool]):
Show a different dialog for the first start.
name (Optional[str]): The applications name.
type (Optional[str]): The file type to be used for saving sessions.
icon (Optional[str]): Path to the application icon.
"""
QtCore.QObject.__init__(self)
# SESSION CONSTANTS:
self.NAME = kwargs.get('name', __main__.__name__)
self.FTYPE = kwargs.get('ftype', 'pyz')
self.ICON = kwargs.get('icon', None)
# hidden app-preferences folder:
self.dir = PathStr.home().mkdir('.%s' % self.NAME)
self.APP_CONFIG_FILE = self.dir.join('config.txt')
self._tmp_dir_session = None
# session specific options:
self.opts = _Opts({
'maxSessions': 3,
'enableGuiIcons': True,
'writeToShell': True,
'createLog': False,
'debugMode': False,
'autosave': False,
'autosaveIntervalMin': 15,
'server': False,
}, self)
# global options - same for all new and restored sessions:
self.app_opts = {'showCloseDialog': True, 'recent sessions': []}
if not self.APP_CONFIG_FILE.exists():
# allow different first start dialog:
dialog = kwargs.get('first_start_dialog', FirstStart)
f = dialog(self)
f.exec_()
if not f.result():
sys.exit()
# create the config file
with open(self.APP_CONFIG_FILE, 'w') as f:
pass
else:
with open(self.APP_CONFIG_FILE, 'r') as f:
r = f.read()
if r:
self.app_opts.update(eval(r))
self._icons_enabled = False
self.log_file = None
dirname = self.app_opts['recent sessions']
if dirname:
dirname = PathStr(dirname[-1]).dirname()
self.dialogs = Dialogs(dirname)
self.saveThread = _SaveThread()
self._createdAutosaveFile = None
self.tmp_dir_save_session = None
# a work-dir for temp. storage:
# self.tmp_dir_work = PathStr(tempfile.mkdtemp('%s_work' % self.NAME))
pathName = self._inspectArguments(args)
self.setSessionPath(pathName)
if self.opts['createLog']:
self._setupLogFile()
# create connectable stdout and stderr signal:
self.streamOut = StreamSignal('out')
self.streamErr = StreamSignal('err')
self._enableGuiIcons()
# Auto-save timer:
self.timerAutosave = QtCore.QTimer()
self.timerAutosave.timeout.connect(self._autoSave)
self.opts.activate()
# first thing to do after start:
QtCore.QTimer.singleShot(0, self.restoreCurrentState)
def setSessionPath(self, path, statename=None):
if path: # and path.endswith('.%s' %self.FTYPE):
# this script was opened out from a zip-container (named as
# '*.pyz')
self.path = PathStr(path)
self.dir = self.path.dirname().abspath()
# extract the zip temporally
ZipFile(self.path, 'r').extractall(path=self.tmp_dir_session)
self.n_sessions = len(self.stateNames())
# SET STATE
snames = self.stateNames()
if statename is None:
# last one
self.current_session = snames[-1]
elif statename in snames:
self.current_session = statename
else:
raise Exception(
"state '%s' not in saved states %s" %
(statename, snames))
else:
self.path = None
self.n_sessions = 0
self.current_session = None
def writeLog(self, write=True):
if not self.log_file:
return
so = self.streamOut.message
se = self.streamErr.message
w = self.log_file.write
if write:
try:
# ensure only connected once
so.disconnect(w)
se.disconnect(w)
except TypeError:
pass
so.connect(w)
se.connect(w)
else:
try:
so.disconnect(w)
se.disconnect(w)
except TypeError:
pass
def _enableGuiIcons(self):
# enable icons in all QMenuBars only for this program if generally
# disabled
if self.opts['enableGuiIcons']:
if os.name == 'posix': # linux
this_env = str(os.environ.get('DESKTOP_SESSION'))
relevant_env = (
'gnome',
'gnome-shell',
'ubuntustudio',
'xubuntu')
if this_env in relevant_env:
if 'false' in os.popen(
# if the menu-icons on the gnome-desktop are disabled
'gconftool-2 --get /desktop/gnome/interface/menus_have_icons').read():
print('enable menu-icons')
os.system(
'gconftool-2 --type Boolean --set /desktop/gnome/interface/menus_have_icons True')
self._icons_enabled = True
def _setupLogFile(self):
lfile = self.tmp_dir_session.join('log.txt')
if lfile.exists():
self.log_file = open(lfile, 'a')
else:
self.log_file = open(lfile, 'w')
self.log_file.write('''
####################################
New run at %s
####################################
''' % strftime("%d.%m.%Y|%H:%M:%S", gmtime()))
def checkMaxSessions(self, nMax=None):
"""
check whether max. number of saved sessions is reached
if: remove the oldest session
"""
if nMax is None:
nMax = self.opts['maxSessions']
l = self.stateNames()
if len(l) > nMax:
for f in l[:len(l) - nMax]:
self.tmp_dir_session.remove(str(f))
def stateNames(self):
"""Returns:
list: the names of all saved sessions
"""
if self.current_session:
s = self.tmp_dir_session
l = s.listdir()
l = [x for x in l if s.join(x).isdir()]
naturalSorting(l)
else:
l=[]
# bring autosave to first position:
if 'autoSave' in l:
l.remove('autoSave')
l.insert(0, 'autoSave')
return l
def restorePreviousState(self):
s = self.stateNames()
if s:
i = s.index(self.current_session)
if i > 1:
self.current_session = s[i - 1]
self.restoreCurrentState()
def restoreNextState(self):
s = self.stateNames()
if s:
i = s.index(self.current_session)
if i < len(s) - 1:
self.current_session = s[i + 1]
self.restoreCurrentState()
def restoreStateName(self, name):
"""restore the state of given [name]"""
self.current_session = name
self.restoreCurrentState()
def renameState(self, oldStateName, newStateName):
s = self.tmp_dir_session.join(oldStateName)
s.rename(newStateName)
if self.current_session == oldStateName:
self.current_session = newStateName
print("==> State [%s] renamed to [%s]" % (oldStateName, newStateName))
def _recusiveReplacePlaceholderWithArray(self, state, arrays):
def recursive(state):
for key, val in list(state.items()):
if isinstance(val, dict):
recursive(val)
elif isinstance(val, str) and val.startswith('arr_'):
state[key] = arrays[val]
recursive(state)
def restoreCurrentState(self):
if self.current_session:
orig = self.tmp_dir_save_session
path = self.tmp_dir_save_session = self.tmp_dir_session.join(
self.current_session)
with open(path.join('state.pickle'), "rb") as f:
state = pickle.load(f)
p = path.join('arrays.npz')
if p.exists():
arrays = np.load(path.join('arrays.npz'))
self._recusiveReplacePlaceholderWithArray(state, arrays)
self.dialogs.restoreState(state['dialogs'])
self.opts.update(state['session'])
self.sigRestore.emit(state)
self.tmp_dir_save_session = orig
print(
"==> State [%s] restored from '%s'" %
(self.current_session, self.path))
def addSession(self):
self.current_session = self.n_sessions
self.n_sessions += 1
self.tmp_dir_save_session = self.tmp_dir_session.join(
str(self.n_sessions)).mkdir()
self.checkMaxSessions()
def quit(self):
print('exiting...')
# RESET ICONS
if self._icons_enabled:
print('disable menu-icons')
os.system( # restore the standard-setting for seeing icons in the menus
'gconftool-2 --type Boolean --set /desktop/gnome/interface/menus_have_icons False')
# WAIT FOR PROMT IF IN DEBUG MODE
if self.opts['debugMode']:
input("Press any key to end the session...")
# REMOVE TEMP FOLDERS
try:
self.tmp_dir_session.remove()
# self.tmp_dir_work.remove()
except OSError:
pass # in case the folders are used by another process
with open(self.APP_CONFIG_FILE, 'w') as f:
f.write(str(self.app_opts))
# CLOSE LOG FILE
if self.log_file:
self.writeLog(False)
self.log_file.close()
def _inspectArguments(self, args):
"""inspect the command-line-args and give them to appBase"""
if args:
self.exec_path = PathStr(args[0])
else:
self.exec_path = None
session_name = None
args = args[1:]
openSession = False
for arg in args:
if arg in ('-h', '--help'):
self._showHelp()
elif arg in ('-d', '--debug'):
print('RUNNGING IN DEBUG-MODE')
self.opts['debugMode'] = True
elif arg in ('-l', '--log'):
print('CREATE LOG')
self.opts['createLog'] = True
elif arg in ('-s', '--server'):
self.opts['server'] = True
elif arg in ('-o', '--open'):
openSession = True
elif openSession:
session_name = arg
else:
print("Argument '%s' not known." % arg)
return self._showHelp()
return session_name
def _showHelp(self):
sys.exit('''
%s-sessions can started with the following arguments:
[-h or --help] - show the help-page
[-d or --debug] - run in debugging-mode
[-l or --log] - create log file
[-n or --new] - start a new session, don'l load saved properties
[-exec [cmd]] - execute python code from this script/executable
''' % self.__class__.__name__)
def save(self):
"""save the current session
override, if session was saved earlier"""
if self.path:
self._saveState(self.path)
else:
self.saveAs()
def saveAs(self, filename=None):
if filename is None:
# ask for filename:
filename = self.dialogs.getSaveFileName(filter="*.%s" % self.FTYPE)
if filename:
self.path = filename
self._saveState(self.path)
if self._createdAutosaveFile:
self._createdAutosaveFile.remove()
print(
"removed automatically created '%s'" %
self._createdAutosaveFile)
self._createdAutosaveFile = None
def replace(self, path):
"""
replace current session with one given by file path
"""
self.setSessionPath(path)
self.restoreCurrentState()
def open(self):
"""open a session to define in a dialog in an extra window"""
filename = self.dialogs.getOpenFileName(filter="*.%s" % self.FTYPE)
if filename:
self.new(filename)
def new(self, filename=None):
"""start a session an independent process"""
path = (self.exec_path,)
if self.exec_path.filetype() in ('py', 'pyw', 'pyz', self.FTYPE):
# get the absolute path to the python-executable
p = find_executable("python")
path = (p, 'python') + path
else:
# if run in frozen env (.exe):
# first arg if execpath of the next session:
path += (self.exec_path,)
if filename:
path += ('-o', filename)
os.spawnl(os.P_NOWAIT, *path)
def registerMainWindow(self, win):
win.setWindowIcon(QtGui.QIcon(self.ICON))
self._mainWindow = win
win.show = self._showMainWindow
win.hide = self._hideMainWindow
if self.opts['server']:
server_ = Server(win)
win.hide()
else:
win.show()
@property
def tmp_dir_session(self):
#only create folder if needed
if self._tmp_dir_session is None:
# make temp-dir
# the directory where the content of the *pyz-file will be copied:
self._tmp_dir_session = PathStr(
tempfile.mkdtemp(
'%s_session' %
self.NAME))
return self._tmp_dir_session
def _showMainWindow(self):
try:
# restore autosave
del self._autosave
except AttributeError:
pass
self._mainWindow.__class__.show(self._mainWindow)
def _hideMainWindow(self):
# disable autosave on hidden window
self._autosave = self.opts['autosave']
self.opts['autosave'] = False
self._mainWindow.__class__.hide(self._mainWindow)
def _saveState(self, path):
"""save current state and add a new state"""
self.addSession() # next session
self._save(str(self.n_sessions), path)
def _autoSave(self):
"""save state into 'autosave' """
a = 'autoSave'
path = self.path
if not path:
path = self.dir.join('%s.%s' % (a, self.FTYPE))
self._createdAutosaveFile = path
self.tmp_dir_save_session = self.tmp_dir_session.join(a).mkdir()
self._save(a, path)
def blockingSave(self, path):
"""
saved session to file - returns after finish
only called by interactiveTutorial-save at the moment
"""
self.tmp_dir_save_session = self.tmp_dir_session.join('block').mkdir()
state = {'session': dict(self.opts),
'dialogs': self.dialogs.saveState()}
self.saveThread.prepare('0', path, self.tmp_dir_session, state)
self.sigSave.emit(self)
self.saveThread.run()
def _save(self, stateName, path):
"""save into 'stateName' to pyz-path"""
print('saving...')
state = {'session': dict(self.opts),
'dialogs': self.dialogs.saveState()}
self.sigSave.emit(state)
self.saveThread.prepare(stateName, path, self.tmp_dir_session, state)
self.saveThread.start()
self.current_session = stateName
r = self.app_opts['recent sessions']
try:
# is this session already exists: remove it
r.pop(r.index(path))
except ValueError:
pass
# add this session at the beginning
r.insert(0, path)
class SaveToFile(Tool):
'''
Save the display image to file
'''
icon = 'export.svg'
def __init__(self, imageDisplay):
Tool.__init__(self, imageDisplay)
self._dialogs = Dialogs()
ftypes = """Portable Network Graphics (*.png)
Windows bitmaps (*.bmp *.dib)
JPEG files (*.jpeg *.jpg *.jpe)
JPEG 2000 files (*.jp2)
Portable image format (*.pbm *.pgm *.ppm)
Sun rasters (*.sr *.ras)
TIFF files (*.tiff *.tif)"""
self.engine = {
'normal image': (self.exportCV2, ftypes),
'32bit floating-point TIFF file':
(self.exportFTiff, 'TIFF file (*.tiff)'),
'rendered': (self.exportRendered, ftypes),
'Numpy array': (self.exportNumpy, 'Numpy array (*.npy)'),
'Txt file':
(lambda: self.exportNumpy(np.savetxt), 'Text file (*.txt)'),
'Video': (self.exportVideo, 'Video file (*.avi *.png)'),
}
pa = self.setParameterMenu()
self.pExportAll = pa.addChild({
'name': 'export all image layers',
'type': 'bool',
'value': False
})
self.pEngine = pa.addChild({
'name':
'Type',
'type':
'list',
'value':
'normal image',
'limits':
list(self.engine.keys()),
'tip':
'''normal image: export the original image array
rendered: export the current display view'''
})
self.pRange = self.pEngine.addChild({
'name':
'Range',
'type':
'list',
'value':
'current',
'limits': ['0-max', 'min-max', 'current'],
'visible':
True
})
self.pDType = self.pEngine.addChild({
'name': 'Bit depth',
'type': 'list',
'value': '16 bit',
'limits': ['8 bit', '16 bit'],
'visible': True
})
self.pDType.sigValueChanged.connect(self._pDTypeChanged)
# self.pCutNegativeValues = self.pEngine.addChild({
# 'name': 'Cut negative values',
# 'type': 'bool',
# 'value':False,
# 'visible':True})
self.pStretchValues = self.pEngine.addChild({
'name':
'Stretch values',
'type':
'bool',
'value':
True,
'visible':
True,
'tip':
'''If True, rather stretch intensities than
cut values higher than maximum image intensity'''
})
self.pOnlyImage = self.pEngine.addChild({
'name': 'Only image',
'type': 'bool',
'value': False,
'tip': '''True - export only the shown image
- excluding background and axes''',
'visible': False
})
self.pEngine.sigValueChanged.connect(self._pEngineChanged)
self.pResize = pa.addChild({
'name': 'Resize',
'type': 'bool',
'value': False
})
self.pAspectRatio = self.pResize.addChild({
'name': 'Keep Aspect Ratio',
'type': 'bool',
'value': True,
'visible': False
})
self.pWidth = self.pResize.addChild({
'name': 'Width',
'type': 'int',
'value': 0,
'visible': False
})
self.pWidth.sigValueChanged.connect(self._pWidthChanged)
self.pHeight = self.pResize.addChild({
'name': 'Height',
'type': 'int',
'value': 0,
'visible': False
})
self.pHeight.sigValueChanged.connect(self._pHeightChanged)
self.pResize.addChild({
'name': 'Reset',
'type': 'action',
'visible': False
}).sigActivated.connect(self._pResetChanged)
self.pResize.sigValueChanged.connect(
lambda param, value: [ch.show(value) for ch in param.children()])
self.pFrames = self.pEngine.addChild({
'name': 'Frames per time step',
'type': 'float',
'value': 15,
'limits': (1, 100),
'visible': False
})
self.pAnnotate = self.pEngine.addChild({
'name': 'Annotate',
'type': 'bool',
'value': True,
'visible': False
})
self.pPath = pa.addChild({'name': 'path', 'type': 'str', 'value': ''})
pChoosePath = self.pPath.addChild({'name': 'choose', 'type': 'action'})
pChoosePath.sigActivated.connect(self._pChoosePathChanged)
self._menu.aboutToShow.connect(self._updateOutputSize)
self._menu.aboutToShow.connect(self._updateDType)
def _pChoosePathChanged(self, _param):
self._choosePath()
self.activate()
def _pResetChanged(self):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
self._menu.aboutToShow.connect(self._updateOutputSize)
self._updateOutputSize()
def _pEngineChanged(self, _param, val):
# self.pCutNegativeValues.show(val == 'normal image')
self.pStretchValues.show(val == 'normal image')
self.pOnlyImage.show(val == 'rendered')
self.pRange.show(val == 'normal image')
self.pDType.show(val == 'normal image')
self.pFrames.show(val == 'Video')
self.pAnnotate.show(val == 'Video')
def _updateOutputSize(self):
if self.pEngine.value() == 'rendered':
size = self.display.size()
w = size.width()
h = size.height()
else:
h, w = self.display.widget.image.shape[1:3]
self.aspectRatio = h / w
self.pWidth.setValue(w, blockSignal=self._pWidthChanged)
self.pHeight.setValue(h, blockSignal=self._pHeightChanged)
def _updateDType(self):
w = self.display.widget
if (w.levelMax - w.levelMin) > 255:
self.pDType.setValue('16 bit', blockSignal=self._pDTypeChanged)
else:
self.pDType.setValue('8 bit', blockSignal=self._pDTypeChanged)
def _pDTypeChanged(self):
# dont change dtype automatically anymore as soon as user changed param
try:
self._menu.aboutToShow.disconnect(self._updateDType)
except:
pass
def _pHeightChanged(self, _param, value):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
if self.pAspectRatio.value():
self.pWidth.setValue(int(round(value / self.aspectRatio)),
blockSignal=self._pWidthChanged)
def _pWidthChanged(self, _param, value):
try:
self._menu.aboutToShow.disconnect(self._updateOutputSize)
except:
pass
if self.pAspectRatio.value():
self.pHeight.setValue(int(round(value * self.aspectRatio)),
blockSignal=self._pHeightChanged)
def _choosePath(self):
filt = self.engine[self.pEngine.value()][1]
kwargs = dict(
filter=filt,
# selectedFilter='png' #this option is not supported in
# PyQt5 any more
)
f = self.display.filenames[0]
if f is not None:
kwargs['directory'] = f.dirname()
path = self._dialogs.getSaveFileName(**kwargs)
if path:
self.pPath.setValue(path)
def activate(self):
# CHECK PATH
if not self.pPath.value():
self._choosePath()
if not self.pPath.value():
raise Exception('define a file path first!')
self.engine[self.pEngine.value()][0]()
def exportRendered(self):
'''
Use QPixmap.grabWidget(display) to save the image
'''
d = self.display
try:
# get instance back from weakref
d = d.__repr__.__self__
except:
pass
# PREPARE LAYOUT:
d.release()
d.hideTitleBar()
if self.pResize.value():
d.resize(self.pWidth.value(), self.pHeight.value())
# SAVE:
path = self.pPath.value()
def grabAndSave(path2):
if self.pOnlyImage.value():
item = d.widget.imageItem
b = item.sceneBoundingRect().toRect()
w = d.widget.grab(b) # QtGui.QPixmap.grabWidget(d.widget, b)
else:
w = d.grab() # QtGui.QPixmap.grabWidget(d)
w.save(path2)
print('Saved image under %s' % path2)
if self.pExportAll.value():
# EACH LAYER SEPARATE
old_i = d.widget.currentIndex
for i in range(len(d.widget.image)):
path2 = path.replace('.', '__%s.' % i)
d.widget.setCurrentIndex(i)
grabAndSave(path2)
d.widget.setCurrentIndex(old_i)
else:
grabAndSave(path)
# RESET LAYOUT:
d.showTitleBar()
d.embedd()
def exportNumpy(self, method=np.save):
'''
Export as a numpy array *.npy
'''
path = self.pPath.value()
w = self.display.widget
image = w.image
if not self.pExportAll.value():
image = image[w.currentIndex]
method(path, image)
print('Saved image under %s' % path)
def _export(self, fn):
def export(img, path):
if self.pResize.value():
img = cv2.resize(img,
(self.pWidth.value(), self.pHeight.value()))
fn(path, img)
print('Saved image under %s' % path)
w = self.display.widget
image = w.image
path = self.pPath.value()
if self.pExportAll.value():
for n, img in enumerate(image):
path2 = path.replace('.', '__%s.' % n)
export(img, path2)
else:
image = image[w.currentIndex]
export(image, path)
def exportFTiff(self):
'''
Use pil.Image.fromarray(data).save() to save the image array
'''
def fn(path, img):
# float tiff only works if img is tiff:
path = path.setFiletype('tiff')
imwrite(path, img, dtype=float)
# imwrite(path, transpose(img), dtype=float)
return self._export(fn)
def exportVideo(self):
self.startThread(self._exportVideoThread)
def _exportVideoThread(self):
ww = self.display.widget
n = None
if self.pAnnotate.value():
n = self.display.layerNames()
videoWrite(self.pPath.value(),
ww.image,
levels=ww.item.levels,
shape=(self.pHeight.value(), self.pWidth.value()),
frames=self.pFrames.value(),
annotate_names=n,
lut=ww.item.lut,
updateFn=self._thread.sigUpdate)
#
# fourcc = cv2.VideoWriter_fourcc(*'XVID')
# ww = self.display.widget
# im = ww.image
# if self.pResize.value():
# w, h = (self.pWidth.value(), self.pHeight.value())
# im = [cv2.resize(i, (w, h)) for i in im]
# else:
# h, w = im.shape[1:3]
# fr = self.pFrames.value()
# pa = self.pPath.value()
# assert pa[-3:] in ('avi',
# 'png'), 'video export only supports *.avi or *.png'
# isVideo = pa[-3:] == 'avi'
# if isVideo:
# cap = cv2.VideoCapture(0)
# # im.ndim==4)
# out = cv2.VideoWriter(pa, fourcc, fr, (w, h), isColor=1)
#
# times = np.linspace(0, len(im), len(im) * fr)
# interpolator = LinearInterpolateImageStack(im)
#
# lut = ww.item.lut
# if lut is not None:
# lut = lut(im[0])
#
# for n, time in enumerate(times):
# # update progress:
# self._thread.sigUpdate.emit(100 * n / len(times))
# image = interpolator(time)
#
# argb = makeRGBA(image, lut=lut,
# levels=ww.item.levels)[0]
# cimg = cv2.cvtColor(argb, cv2.COLOR_RGBA2BGR)
#
# if isVideo:
# out.write(cimg)
# else:
# cv2.imwrite('%s_%i_%.3f.png' % (pa[:-4], n, time), cimg)
#
# if isVideo:
# cap.release()
# out.release()
def exportCV2(self):
'''
Use cv2.imwrite() to save the image array
'''
w = self.display.widget
def fn(path, img):
r = self.pRange.value()
if r == '0-max':
r = (0, w.levelMax)
elif r == 'min-max':
r = (w.levelMin, w.levelMax)
else: # 'current'
r = w.ui.histogram.getLevels()
int_img = toUIntArray(
img,
# cutNegative=self.pCutNegativeValues.value(),
cutHigh=~self.pStretchValues.value(),
range=r,
dtype={
'8 bit': np.uint8,
'16 bit': np.uint16
}[self.pDType.value()])
if isColor(int_img):
int_img = cv2.cvtColor(int_img, cv2.COLOR_RGB2BGR)
cv2.imwrite(path, int_img)
return self._export(fn)
class Export(Tool):
'''
Save the display image to file
'''
icon = 'export.svg'
def __init__(self, imageDisplay):
Tool.__init__(self, imageDisplay)
self._dialogs = Dialogs()
ftypes = """Portable Network Graphics (*.png)
Windows bitmaps (*.bmp *.dib)
JPEG files (*.jpeg *.jpg *.jpe)
JPEG 2000 files (*.jp2)
Portable image format (*.pbm *.pgm *.ppm)
Sun rasters (*.sr *.ras)
TIFF files (*.tiff *.tif)"""
self.engine = {'original':
(self.exportOriginal,
ftypes),
'rendered':
(self.exportRendered,
ftypes),
'Numpy array':
(self.exportNumpy,
'Numpy array (*.npy)'),
'Txt file':
(lambda:self.exportNumpy(np.savetxt),
'Text file (*.txt)'),
}
pa = self.setParameterMenu()
self.pExportAll = pa.addChild({
'name': 'export all image layers',
'type': 'bool',
'value':False})
self.pEngine = pa.addChild({
'name': 'Type',
'type': 'list',
'value':'original',
'limits':self.engine.keys(),
'tip':'''original: export the original image array
rendered: export the current display view'''})
self.pCutNegativeValues = self.pEngine.addChild({
'name': 'Cut negative values',
'type': 'bool',
'value':False,
'visible':True})
self.pStretchValues = self.pEngine.addChild({
'name': 'Stretch values',
'type': 'bool',
'value':False,
'visible':True})
self.pOnlyImage = self.pEngine.addChild({
'name': 'Only image',
'type': 'bool',
'value':False,
'tip':'True - export only the shown image - excluding background and axes',
'visible':False})
self.pEngine.sigValueChanged.connect(self._pEngineChanged)
self.pResize = pa.addChild({
'name': 'Resize',
'type': 'bool',
'value':False})
self.pAspectRatio = self.pResize.addChild({
'name': 'Keep Aspect Ratio',
'type': 'bool',
'value':True,
'visible':False})
self.pWidth = self.pResize.addChild({
'name': 'Width',
'type': 'int',
'value': 0,
'visible':False})
self.pWidth.sigValueChanged.connect(self._pWidthChanged)
self.pHeight = self.pResize.addChild({
'name': 'Height',
'type': 'int',
'value': 0,
'visible':False})
self.pHeight.sigValueChanged.connect(self._pHeightChanged)
self.pResize.sigValueChanged.connect(lambda param, value:
[ch.show(value) for ch in param.children()] )
self.pPath = pa.addChild({
'name': 'path',
'type': 'str',
'value':''})
pChoosePath = self.pPath.addChild({
'name': 'choose',
'type': 'action'})
pChoosePath.sigActivated.connect(self._pChoosePathChanged)
self._menu.aboutToShow.connect(self._updateDisplayDize)
def _pChoosePathChanged(self, param):
self._choosePath()
self.activate()
def _pEngineChanged(self, param, val):
self.pCutNegativeValues.show(val == 'original')
self.pStretchValues.show(val == 'original')
self.pOnlyImage.show(val == 'rendered')
def _updateDisplayDize(self):
size = self.display.size()
w = size.width()
h = size.height()
self.aspectRatio = h / float(w)
self.pWidth.setValue(w, blockSignal=self._pWidthChanged)
self.pHeight.setValue(h, blockSignal=self._pHeightChanged)
def _pHeightChanged(self, param, value):
if self.pAspectRatio.value():
self.pWidth.setValue(value/self.aspectRatio,
blockSignal=self._pWidthChanged)
def _pWidthChanged(self, param, value):
if self.pAspectRatio.value():
self.pHeight.setValue(value*self.aspectRatio,
blockSignal=self._pHeightChanged)
def _choosePath(self):
filt = self.engine[self.pEngine.value()][1]
kwargs = dict(filter=filt, selectedFilter='png')
f = self.display.filenames[0]
if f is not None:
kwargs['directory'] = f.dirname()
path = self._dialogs.getSaveFileName(**kwargs)
if path and path != '.':
self.pPath.setValue(path)
def activate(self):
#CHECK PATH
if not self.pPath.value():
self._choosePath()
if not self.pPath.value():
raise Exception('define a file path first!')
self.engine[ self.pEngine.value() ][0] ()
def exportRendered(self):
'''
Use QPixmap.grabWidget(display) to save the image
'''
d = self.display
try:
#get instance back from weakref
d = d.__repr__.__self__
except:
pass
#PREPARE LAYOUT:
d.release()
d.hideTitleBar()
if self.pResize.value():
d.resize(self.pWidth.value(), self.pHeight.value())
#SAVE:
path = self.pPath.value()
def grabAndSave(path2):
if self.pOnlyImage.value():
item = d.widget.imageItem
b = item.sceneBoundingRect().toRect()
w = QtGui.QPixmap.grabWidget(d.widget, b)
else:
w = QtGui.QPixmap.grabWidget(d)
w.save(path2)
print 'Saved image under %s' %path2
if self.pExportAll.value():
#EACH LAYER SEPARATE
old_i = d.widget.currentIndex
for i in range(len(d.widget.image)):
path2 = path.replace('.', '__%s.' %i)
d.widget.setCurrentIndex(i)
grabAndSave(path2)
d.widget.setCurrentIndex(old_i)
else:
grabAndSave(path)
#RESET LAYOUT:
d.showTitleBar()
d.embedd()
def exportNumpy(self, method=np.save):
'''
Export as a numpy array *.npy
'''
path = self.pPath.value()
w = self.display.widget
image = w.image
if not self.pExportAll.value():
image = image[w.currentIndex]
method(path, image)
print 'Saved image under %s' %path
def exportOriginal(self):
'''
Use cv2.imwrite() to save the image array
'''
def export(img, path):
if self.pResize.value():
img = cv2.resize(img, (self.pHeight.value(), self.pWidth.value()) )
else:
img = img.copy()
int_img = toUIntArray(img,
cutNegative=self.pCutNegativeValues.value(),
cutHigh=~self.pStretchValues.value())
cv2.imwrite(path,out(int_img))
print 'Saved image under %s' %path
w = self.display.widget
image = w.image
path = self.pPath.value()
if self.pExportAll.value():
for n, img in enumerate(image):
path2 = path.replace('.', '__%s.' %n)
export(img, path2)
else:
image = image[w.currentIndex]
export(image, path)
