def test_make_html_file(self):
"""The HTML file is generated in the correct place"""
data = self.list_data_multiple_plots[0]
data1 = self.list_data_multiple_plots[1]
png_img_fp = path.join(self.output_dir, data[LD_NAME] + '.png')
eps_gz_fp = path.join(self.output_dir, data[LD_NAME] + '.eps.gz')
png_img_fp1 = path.join(self.output_dir, data1[LD_NAME] + '.png')
eps_gz_fp1 = path.join(self.output_dir, data1[LD_NAME] + '.eps.gz')
overlib_fp = path.join(self.output_dir, 'overlib.js')
self._paths_to_clean_up = [png_img_fp, eps_gz_fp, png_img_fp1,
eps_gz_fp1, overlib_fp, self.html_fp]
self._dirs_to_clean_up = [self.output_dir]
mkdir(self.output_dir)
make_html_file(self.list_data_multiple_plots, self.mapping_data,
self.html_fp, self.output_dir)
self.assertTrue(path.exists(png_img_fp),
'The png file was not created in the appropiate location')
self.assertTrue(path.exists(eps_gz_fp),
'The eps file was not created in the appropiate location')
self.assertTrue(path.exists(png_img_fp1),
'The png file was not created in the appropiate location')
self.assertTrue(path.exists(eps_gz_fp1),
'The eps file was not created in the appropiate location')
self.assertTrue(path.exists(overlib_fp),
'The overlib.js file was not copied in the appropiate location')
self.assertTrue(path.exists(self.html_fp),
'The html file was not created in the appropiate location')
def make_distance_matrix_heatmap(dm_lines, mapping_lines, html_fp, output_dir):
"""Create an html with a heatmap of the distance matrix
Inputs:
dm_lines: distance matrix open file object
mapping_lines: mapping open file object
html_fp: filepath of the output html file
output_dir: path of the output directory which will contain the aux
html files
"""
# Parse input files
data = generate_data_make_html(dm_lines)
mapping_data = parse_mapping_file_to_dict(mapping_lines)
# Create the html file
make_html_file([data], mapping_data, html_fp, output_dir)
def make_beta_significance_heatmap(beta_significance_fp, mapping_fp, html_fp,
output_dir):
"""Creates an html file with the heatmaps of beta significance analysis
Inputs:
beta_significance_fp: beta significance results filepath
mapping_fp: mapping filepath
html_fp: output html filepath
output_dir: output directory where the aux html files will be stored
"""
bs_lines = open(beta_significance_fp, 'U')
l_data = generate_data_make_html(bs_lines)
mapping_data = parse_mapping_file_to_dict(open(mapping_fp, 'U'))
make_html_file(l_data, mapping_data, html_fp, output_dir)
def make_beta_significance_heatmap(beta_significance_fp, mapping_fp, html_fp,
output_dir):
"""Creates an html file with the heatmaps of beta significance analysis
Inputs:
beta_significance_fp: beta significance results filepath
mapping_fp: mapping filepath
html_fp: output html filepath
output_dir: output directory where the aux html files will be stored
"""
bs_lines = open(beta_significance_fp, 'U')
l_data = generate_data_make_html(bs_lines)
mapping_data = parse_mapping_file_to_dict(open(mapping_fp, 'U'))
make_html_file(l_data, mapping_data, html_fp, output_dir)
def test_make_html_file(self):
"""The HTML file is generated in the correct place"""
data = self.list_data_multiple_plots[0]
data1 = self.list_data_multiple_plots[1]
png_img_fp = path.join(self.output_dir, data[LD_NAME] + '.png')
eps_gz_fp = path.join(self.output_dir, data[LD_NAME] + '.eps.gz')
png_img_fp1 = path.join(self.output_dir, data1[LD_NAME] + '.png')
eps_gz_fp1 = path.join(self.output_dir, data1[LD_NAME] + '.eps.gz')
overlib_fp = path.join(self.output_dir, 'overlib.js')
self._paths_to_clean_up = [
png_img_fp, eps_gz_fp, png_img_fp1, eps_gz_fp1, overlib_fp,
self.html_fp
]
self._dirs_to_clean_up = [self.output_dir]
mkdir(self.output_dir)
make_html_file(self.list_data_multiple_plots, self.mapping_data,
self.html_fp, self.output_dir)
self.assertTrue(
path.exists(png_img_fp),
'The png file was not created in the appropiate location')
self.assertTrue(
path.exists(eps_gz_fp),
'The eps file was not created in the appropiate location')
self.assertTrue(
path.exists(png_img_fp1),
'The png file was not created in the appropiate location')
self.assertTrue(
path.exists(eps_gz_fp1),
'The eps file was not created in the appropiate location')
self.assertTrue(
path.exists(overlib_fp),
'The overlib.js file was not copied in the appropiate location')
self.assertTrue(
path.exists(self.html_fp),
'The html file was not created in the appropiate location')