def disconnect(self):
'disconnect all the stored connection ids'
self.canvas.mpl_disconnect(self.cid_press)
self.canvas.mpl_disconnect(self.cid_draw)
def poly_gate(fcm, idxs):
fig = plt.figure()
ax = fig.add_subplot(111)
gate = Gate(fcm, idxs, ax)
plt.show()
return gate.gate
if __name__ == '__main__':
import sys
sys.path.append('../')
from fcm import FCSreader
fcm = FCSreader('../../sample_data/3FITC_4PE_004.fcs').get_FCMdata()
fig = plt.figure()
ax = fig.add_subplot(111)
idxs = [2, 3]
gate = Gate(fcm, idxs, ax)
plt.show()
print fcm.tree.nodes
print gate.gate
def setUp(self):
self.fcm = FCSreader('../sample_data/coulter.lmd').get_FCMdata()
def setUp(self):
self.fcm = FCSreader('../sample_data/3FITC_4PE_004.fcs').get_FCMdata()
def testGetSecondFile(self):
x = FCSreader('../sample_data/coulter.lmd')
z = x.get_FCMdata()
y = x.get_FCMdata()
self.assertEqual(z.shape, y.shape, 'Failed to load second dataset')
self.assertNotEqual(z[0, 0], y[0, 0], 'Failed to load second dataset')
def testGetSecondFile(self):
x = FCSreader('../sample_data/coulter.lmd')
z = x.get_FCMdata()
y = x.get_FCMdata()
self.assertEqual(z.shape, y.shape, 'Failed to load second dataset')
self.assertNotEqual(z[0,0], y[0,0], 'Failed to load second dataset')