def main():
# The file contains information about the features
# Format -> Feature name:Values it can take (seperated by commas)
with open("feature.info") as f:
data_info = f.readlines()
# Create feature nodes
features = feature_info(data_info)
# Cross Validation
print("Running Cross Validation For depths...")
for depth in depths:
cross_validation(depth, features)
# Transform the data
with open(f_train) as f:
data = [line.rstrip() for line in f]
data_train = featurization.featurize(data)
with open(f_test) as f:
tdata = [line.rstrip() for line in f]
data_test = featurization.featurize(tdata)
tree = build_tree(data_train, features, -1)
print("Accuracy on Train ", test(tree, data_train, False))
print("Accuracy on Test ", test(tree, data_test, False))
with open(f_eval) as f:
tdata = [line.rstrip() for line in f]
eval_data = featurization.featurize(tdata)
test(tree, eval_data, True)
def cross_validation(depth, features):
with open(f_train) as f:
examples = f.readlines()
total = len(examples)
fifth = int(total / 5)
cv1 = examples[:fifth]
cv2 = examples[fifth:2 * fifth]
cv3 = examples[2 * fifth:3 * fifth]
cv4 = examples[3 * fifth:4 * fifth]
cv5 = examples[4 * fifth:]
CROSS_VALIDATION_FILES = [cv1, cv2, cv3, cv4, cv5]
train_examples = None
test_examples = None
for i in range(5):
test_examples = CROSS_VALIDATION_FILES[i]
train_examples_arr = [
exs for exs in CROSS_VALIDATION_FILES if exs != test_examples
]
train_examples = []
for arr in train_examples_arr:
train_examples.extend(arr)
train_data = featurization.featurize(train_examples)
test_data = featurization.featurize(test_examples)
tree = build_tree(train_data, features, depth)
accs = [test(tree, test_data, False)]
print("Depth ", depth, "Avg. Accuracy ", np.mean(accs))
def cross_validation(depth, features):
data = []
accs = []
for i in range(4):
indexs = [j for j in range(4)]
indexs.remove(i)
f_test = f_cross.replace(".", '0' + str(i) + '.')
data_t = featurization.featurize(f_test)
data = []
for index in indexs:
data += featurization.featurize(
f_cross.replace(".", '0' + str(index) + '.'))
accs.append(test(data, data_t, features, depth))
print("Depth ", depth, "Avg. Accuracy ", np.mean(accs), "Std. Deviation ",
np.std(accs))
def main():
#The file contains information about the features
#Format -> Feature name:Values it can take (seperated by commas)
with open("info.txt") as f:
data_info = f.readlines()
#Transform the data
data_train = featurization.featurize(f_train)
data_test = featurization.featurize(f_test)
#Create feature nodes
features = feature_info(data_info)
print("Accuracy on Train ", test(data_train, data_train, features, -1))
print("Accuracy on Test ", test(data_train, data_test, features, -1))
for depth in depths:
cross_validation(depth, features)
def main():
parser = argparse.ArgumentParser()
parser.add_argument(
"--dataset",
default=None,
type=str,
required=True,
help="Path to dataframe",
)
parser.add_argument(
"--glove_path",
default=None,
type=str,
required=True,
help="Path to pre-trained glove embeddings",
)
parser.add_argument(
"--word_dir",
default=None,
type=str,
required=True,
help="Path to directory containing all special hand-crafted features",
)
parser.add_argument(
"--featurization_type",
default=0,
type=int,
required=False,
help="Type of featurization 0-->Average Glove, 1-->TF-IDF Glove, 2-->USE",
)
parser.add_argument(
"--run_implementation",
default=0,
type=int,
required=True,
help="run implementation number? (1/2/3)",
)
args = parser.parse_args()
# load dataset
final_df = pd.read_pickle(args.dataset)
le=LabelEncoder()
final_df.labels=le.fit_transform(final_df.labels)
traindf,testdf,xTrain,xTest,yTrain,yTest=split_dataframe(final_df,'Requirements','Requirements_clean','Requirements_clean')
glove = Magnitude(args.glove_path)
tfidf = TfidfVectorizer()
tfidf.fit(xTrain)
idf_dict = dict(zip(tfidf.get_feature_names(), tfidf.idf_))
if args.run_implementation==1:
if args.featurization_type==1:
train_features, test_features, feature_names = featurization.featurize(args,traindf,testdf,featurization.tfidf_glove,glove,idf_dict)
elif args.featurization_type==2:
train_features, test_features, feature_names = featurization.featurize_USE(args,traindf,testdf,featurization.USE_Vec)
else:
train_features, test_features, feature_names = featurization.featurize(args,traindf,testdf,featurization.Glove_Vec,glove,None)
y_train = np.array(traindf.labels.values)
y_test = np.array(testdf.labels.values)
file_names=[('rf.sav','RF'),('lr.sav','LR'),('bdt.sav','BDT'),('svc.sav','SVC'),('xgb.sav','XGB'),('ann.sav','ANN'),('knn.sav','KNN')]
for _,name in enumerate(file_names):
est=tuning(name[1],train_features,y_train)
print(name[1]+": ")
print_model_metrics(y_testy_test,y_test_pred=np.array(est.predict(test_features)),verbose=False,return_metrics=True)
print("\n")
pickle.dump(est,open(name[0],'wb'))
if args.run_implementation==2:
xTrain_pad,xTest_pad,yTrain_enc,yTest_enc,embed_matrix,tok=preprocessing_for_lstm(xTrain,xTest,yTrain,yTest,glove,20000,100,128)
y_train = np.array(traindf.labels.values)
y_test = np.array(testdf.labels.values)
input_lstm={
'vocabulary_size':len(tok.word_index)+1,
'embed_size':100,
'embedding_matrix':embed_matrix,
'hidden_dim':16,
'output_size':5,
'seq_length':xTrain_pad.shape[1]
}
model_lstm=LSTM_tf(**input_dic)
num_epochs = 5
history = model_lstm.fit(xTrain_pad, yTrain_enc, epochs=num_epochs, validation_data=(xTest_pad, yTest_enc))
print_model_metrics(y_test=np.array(yTest),y_test_pred=np.array(model_lstm.predict_classes(xTest_pad)),verbose=False,return_metrics=True)
input_CNN={
'vocabulary_size':len(tok.word_index)+1,
'embed_size':100,
'embedding_matrix':None,
'filters':8,
'output_size':5,
'pool_size':3,
'kernel_size':3,
'seq_length':xTrain_pad.shape[1]
}
model_cnn=CNN_tf(**input_CNN)
history = model_cnn.fit(xTrain_pad, yTrain_enc, epochs=num_epochs)
print(print_model_metrics(y_test=np.array(yTest),y_test_pred=np.array(model_cnn.predict_classes(xTest_pad)),verbose=False,return_metrics=True))
def extract_features(all_inputs):
""" Yields (label, feature) tuples.
Images labeled by directory name, featurized by featurization.py. """
shuffle(all_inputs)
for i, png in enumerate(all_inputs):
yield png.split('/')[-2], featurize(png)
return v+v2
'''
fp = open('../input/train.v02.csv')
h1 = fp.readline().replace("\"", "").rstrip().split(",")
header_1 = {x[0]: x[1] for x in zip(h1, range(len(h1)))}
train_raw = []
train = []
train_label = []
for line in csv.reader(fp):
train_raw.append(line)
my_dict = {}
my_dict['month'] = line[header_1['Date']].split("-")[1]
train.append(featurize(line, header_1, my_dict))
train_label.append(int(line[header_1['WnvPresent']]))
fp.close()
fp = open('../input/test.v02.csv')
h2 = fp.readline().replace("\"", "").rstrip().split(",")
header_2 = {x[0]: x[1] for x in zip(h2, range(len(h2)))}
test_raw = []
test = []
test_label = []
for line in csv.reader(fp):
test_raw.append(line)
my_dict = {}
my_dict['month'] = line[header_1['Date']].split("-")[1]
test.append(featurize(line, header_2, my_dict))
test_label.append(int(line[header_2['WnvPresent']]))
for line in f_matrix:
if l[h[line[0]]]==line[1]:
v[line[2]]=1.0
return v
'''
fp = open('../input/train.v02.csv')
h1 = fp.readline().replace("\"", "").rstrip().split(",")
header_1 = {x[0]: x[1] for x in zip(h1, range(len(h1)))}
train_raw = []
train = []
train_label = []
for line in csv.reader(fp):
train_raw.append(line)
train.append(featurize(line, header_1))
train_label.append(int(line[header_1['WnvPresent']]))
fp.close()
fp = open('../input/test.v02.csv')
h2 = fp.readline().replace("\"", "").rstrip().split(",")
header_2 = {x[0]: x[1] for x in zip(h2, range(len(h2)))}
test_raw = []
test = []
test_label = []
for line in csv.reader(fp):
test_raw.append(line)
test.append(featurize(line, header_2))
test_label.append(int(line[header_2['WnvPresent']]))
fp.close()
tree = spatial.KDTree(coords)
for line in train_raw:
v = tree.query_ball_point([
float(line[header_1['Latitude']]) / 0.9335,
float(line[header_1['Longitude']])
], 0.0058)
if len(v) > 0:
density = float(sum([train_label[x] for x in v])) / len(v)
else:
density = 0.0
my_dict = {}
my_dict['month'] = line[header_1['Date']].split("-")[1]
train.append(featurize(line, header_1, my_dict) + [density])
fp = open('../input/test.v02.csv')
h2 = fp.readline().replace("\"", "").rstrip().split(",")
header_2 = {x[0]: x[1] for x in zip(h2, range(len(h2)))}
test_raw = []
test = []
test_label = []
for line in csv.reader(fp):
test_raw.append(line)
v = tree.query_ball_point([
float(line[header_1['Latitude']]) / 0.9335,
float(line[header_1['Longitude']])
], 0.0058)
if len(v) > 0:
fp.close()
#Construct the KD Tree to help us find neighbors within a radius
tree = spatial.KDTree(coords)
for line in train_raw:
v = tree.query_ball_point([
float(line[header_1['Latitude']]) / 0.9335,
float(line[header_1['Longitude']])
], 0.0058)
if len(v) > 0:
density = float(sum([train_label[x] for x in v])) / len(v)
else:
density = 0.0
train.append(featurize(line, header_1, {}) + [density])
fp = open('../input/test.v02.csv')
h2 = fp.readline().replace("\"", "").rstrip().split(",")
header_2 = {x[0]: x[1] for x in zip(h2, range(len(h2)))}
test_raw = []
test = []
test_label = []
for line in csv.reader(fp):
test_raw.append(line)
v = tree.query_ball_point([
float(line[header_1['Latitude']]) / 0.9335,
float(line[header_1['Longitude']])
], 0.0058)
if len(v) > 0: