def PlotSpillageVsNoiseFrequency(): frequencies = [x/100.0 for x in range(5980, 6020)] allData = [[] for _ in frequencies] sps = 768 xs =[] for i, noiseFreq in enumerate(frequencies): data = dataImport.generateSignal(rawSps, [(noiseFreq, 1.0)]) startOffset = 7 for offset in range(0, 2500, 100): downSampledData = fftDataExtraction.downSample(data, rawSps, sps)[offset+startOffset:offset+128+startOffset] #pylab.plot([x/float(sps) for x in range(len(downSampledData))], downSampledData); pylab.show() #print sps, offset, len(downSampledData) #frequencies = [float(sps) * x / len(downSampledData) for x in range(len(downSampledData)/2+1)] leakage = getToneLeakage(downSampledData) #print 'leakage: %f' % leakage #plot(fData, frequencies) #print '%d - %f' % (sps, leakage) allData[i].append(leakage) pylab.subplot(211) for ys in zip(*allData): pylab.plot(frequencies, ys) pylab.grid(True) means = map(stats.mean, allData) pylab.subplot(212) pylab.grid(True) pylab.plot(frequencies, means, '-o') pylab.show()
def createChangingTimeDomainDataPhaseMatch(baseFilename, low = 0, high = 10):
dat0 = dataImport.readADSFile(baseFilename % low)
dat1 = dataImport.readADSFile(baseFilename % high)
sps = dataImport.getSPS(baseFilename % low)
if dataImport.getSPS(baseFilename % high) != sps:
raise Exception("samples per second do not match - FAIL")
dataSources = [dat0, dat1]
indeces = [0, 0]
if dataLength < float(constants.windowSize) / constants.samplesPerSecond * 1.5:
raise Exception("Data length is too short - not getting full ffts of a single data source")
numSamples = int(dataLength * sps)
result = []
output = []
for i in range(numSignalChunks * 2):
newIndex = i % 2
if i == 0:
dataToAppend = centerAroundZero(dataSources[newIndex][indeces[newIndex] : indeces[newIndex] + numSamples])
indeces[newIndex] += numSamples
else:
#gotta phase match
newData = centerAroundZero(dataSources[newIndex][indeces[newIndex] : int(indeces[newIndex] + numSamples + sps * startIndexRange*2)])
startOffset = getBestStartIndex(result, newData, sps)
#print startOffset
dataToAppend = newData[startOffset: startOffset + numSamples]
indeces[newIndex] += numSamples + startOffset
if len(dataToAppend) != numSamples:
raise Exception("Data to be appended is not the correct length")
oldIndex = len(result)
result += dataToAppend
output += [newIndex] * numSamples
#down sample result and output
result = fftDataExtraction.downSample(result, sps, interpolate = True)
output = fftDataExtraction.downSample(output, sps,)
return result, output
def PlotSpillageVsSampleFrequency(rawData, rawSps): startOffset = 7 allData = [] start = 748 end = 488 for offset in range(0, 2500, 100): xs =[] ys = [] for sps in range(748, 788, 1): #sps /= 10.0 downSampledData = fftDataExtraction.downSample(data, rawSps, sps)[offset+startOffset:offset+128+startOffset] #pylab.plot([x/float(sps) for x in range(len(downSampledData))], downSampledData); pylab.show() #print sps, offset, len(downSampledData) frequencies = [float(sps) * x / len(downSampledData) for x in range(len(downSampledData)/2+1)] leakage = getToneLeakage(downSampledData) #print 'leakage: %f' % leakage #plot(fData, frequencies) #print '%d - %f' % (sps, leakage) xs.append(sps) ys.append(leakage) allData.append(ys) pylab.subplot(211) for ys in allData: pylab.plot(xs, ys) means = map(stats.mean, zip(*allData)) pylab.subplot(212) pylab.plot(xs, means, '-o') pylab.grid(True) order = 2 coefficients = polyfit(xs, means, order) print coefficients, stats.quadraticMinimum(*coefficients) generated = [] for x in xs: y = sum([(float(x)**float(order - i)) * c for i, c in enumerate(coefficients)]) #print x,y generated.append(y) diff = sum([(x1-x2)**2.0 / x1 for x1, x2 in zip(generated, means)]) print start, end, diff #pylab.plot(xs, generated) pylab.show()
def QuadraticGuessIteration(rawData): fDown = 8000.0 + 200.0 * (random() - 0.5) rawSps = fDown; rawData = fftDataExtraction.downSample(rawData, 32000, fDown, interpolate = False)[int(random() * 100):] calculatedSampleRate = (59.96 / 60.0 * samplesPerSecond * rawSps / fDown) algorithm = QuadraticErrorFitting2(0) testSampleInterval = algorithm.GetFirstInterval() testIntervalCounter = 0.0 testBufferNewAmount = windowSize testBuffer = [] testLeakages = []; testLeakageTimes = [] testSampleRates = [] lastSample = 0.0 for index, sample in enumerate(rawData): time = float(index) / rawSps testIntervalCounter += 1.0 if testIntervalCounter >= testSampleInterval: testIntervalCounter %= testSampleInterval weight0 = min(1.0, testIntervalCounter) weight1 = max(0.0, 1.0 - testIntervalCounter) interpolatedSample = weight0 * sample + weight1 * lastSample testBuffer.append(interpolatedSample) if len(testBuffer) > windowSize + testBufferNewAmount: testBuffer = testBuffer[-windowSize:] leakage = getToneLeakage(testBuffer) testLeakages.append(leakage) testLeakageTimes.append(time) testSampleRates.append(float(rawSps) / testSampleInterval) realSampleInterval, testSampleInterval, isDone = algorithm.OnNewBuffer(testBuffer, testSampleInterval, True) if isDone: #print testSampleInterval break return calculatedSampleRate, rawSps / testSampleInterval
def getSVMTrainingData(datas): trainingDatas = [] for rawData, output in datas: channels = zip(*rawData) allBins = [] for channel in channels: downSampledData = fftDataExtraction.downSample(channel, rawSps, constants.samplesPerSecond, interpolate = True) transforms = fftDataExtraction.applyTransformsToWindows(fftDataExtraction.getFFTWindows(downSampledData), magnitude = True, polyFitSubtraction = 2) bins = fftDataExtraction.DoFrequencyBinning(transforms) allBins.append(bins) trainingInputs = map(lambda x: x[0] + x[1], zip(*allBins)) trainingDatas += [(input, output) for input in trainingInputs] return trainingDatas
def getSignalCoherenceError(downSampledFrequency, rawData = rawData): downSampled = fftDataExtraction.downSample(rawData, rawSps, downSampledFrequency, interpolate = True)#[int(random()*100):] #downSampled = downSampled[:int(downSampledFrequency)/2] #downSampled = downSampled[:40] highSamples = downSampled[::2] lowSamples = downSampled[1::2] times = map(lambda x: x/downSampledFrequency, range(len(downSampled))) highTimes = times[::2] lowTimes = times[1::2] differences = map(lambda x: (x[0]-x[1])**1.0, zip(highSamples, lowSamples)) slope, yint = stats.lineOfBestFit(highTimes, differences) #return slope #return abs(slope) #return 1.0 / slope #return max(differences) - min(differences) #derivSquared = sum([(differences[i+1] - differences[i])**2.0 for i in range(len(differences)-1)]) #return derivSquared return stats.variance(differences)
seed(1) samplesPerSecond = 768 windowSize = 128 rangePercentage = 2.0 channels = 7 measurementCount = 10 filename = "Data/Mark/32kSPS_160kS_FlexorRadialis_0%.xls"; rawSps = 32000 #filename = "Data/Mark/32kSPS_160kS_ExtensorRadialis_0%.xls"; rawSps = 32000 rawData = dataImport.readADSFile(filename) f = 59.96 #rawData = dataImport.generateSignal(rawSps, [(f, 1.0)], seconds = 5.0, noise = 1.0) rawSps = 8000 rawData = fftDataExtraction.downSample(rawData, 32000, rawSps, interpolate = False)[int(random() * 100):] overlap = 50 * 128 * rawSps / 768**2 #take this for all channels, could be slight different but ok def getToneLeakage(downSampledData): noiseBin = 10 power = map(lambda x: x*x, map(numpy.absolute, fourier(downSampledData))) result = (power[noiseBin-1] + power[noiseBin+1]) / power[noiseBin] #result = power[noiseBin-1] + power[noiseBin+1] return result def GetConvergence(data, plot = True, initialOffset = 0.0): baseInterval = rawSps / (samplesPerSecond + initialOffset) channelIntervals = [baseInterval + rangePercentage * i * 0.02 for i in range(-channels/2+1, channels/2+1)] sampleFrequencies = map(lambda x: rawSps / x, channelIntervals)
import dataImport import fftDataExtraction import stats from matplotlib import pylab from numpy import polyfit from random import random from multiprocessing import Pool filename = "Data/Mark/32kSPS_160kS_FlexorRadialis_0%.xls"; rawSps = 32000 #filename = "Data/Mark/32kSPS_160kS_ExtensorRadialis_0%.xls"; rawSps = 32000 #filename = "NoiseData/6 Loops 8000SPS Volts.xls"; rawSps = 8000 rawData = dataImport.readADSFile(filename) f = 60.0 #rawData = dataImport.generateSignal(8000, [(f, 1.0)], seconds = 10.0) rawData = fftDataExtraction.downSample(rawData, rawSps, 8000, interpolate = False) rawSps = 8000 #finalSps = 120.0 #downSampled = fftDataExtraction.downSample(rawData, rawSps, finalSps, interpolate = True) def getSignalCoherenceError(downSampledFrequency, rawData = rawData): downSampled = fftDataExtraction.downSample(rawData, rawSps, downSampledFrequency, interpolate = True)#[int(random()*100):] #downSampled = downSampled[:int(downSampledFrequency)/2] #downSampled = downSampled[:40] highSamples = downSampled[::2] lowSamples = downSampled[1::2] times = map(lambda x: x/downSampledFrequency, range(len(downSampled))) highTimes = times[::2]
def PlotFreqDomain(rawData, rawSps, sps): rawData = fftDataExtraction.downSample(data, rawSps, sps)
