def profile(request):
'''Calculates and returns a profile.
:returns: JSON -- profile representation
'''
# test URL params: chr21, 13591070, 14845362, z0
if 'uuid' in request.GET:
uuid = request.GET['uuid']
else:
msg = "Please provide a UUID"
logger.error(msg)
return HttpResponse(msg)
if 'seq' in request.GET:
seq = request.GET['seq']
else:
msg = "Please provide a sequence name"
logger.error(msg)
return HttpResponse(msg)
if 'zoom' in request.GET:
zoom = request.GET['zoom']
else:
msg = "Please provide zoom level"
logger.error(msg)
return HttpResponse(msg)
if 'start' in request.GET:
start = int(request.GET['start'])
else:
msg = "Please provide a start position"
logger.error(msg)
return HttpResponse(msg)
if 'end' in request.GET:
end = int(request.GET['end'])
else:
msg = "Please provide an end position"
logger.error(msg)
return HttpResponse(msg)
item = models.get(uuid)
try:
profile = item.get_profile(seq, zoom, ["mean"], start, end)
except AttributeError as e:
#return HttpResponse("_FileServerItem with UUID [" + uuid + "] was not found")
return HttpResponse(e.message)
return HttpResponse(profile, mimetype='application/json')
def profile(request):
'''Calculates and returns a profile.
:returns: JSON -- profile representation
'''
# test URL params: chr21, 13591070, 14845362, z0
if 'uuid' in request.GET:
uuid = request.GET['uuid']
else:
msg = "Please provide a UUID"
logger.error(msg)
return HttpResponse(msg)
if 'seq' in request.GET:
seq = request.GET['seq']
else:
msg = "Please provide a sequence name"
logger.error(msg)
return HttpResponse(msg)
if 'zoom' in request.GET:
zoom = request.GET['zoom']
else:
msg = "Please provide zoom level"
logger.error(msg)
return HttpResponse(msg)
if 'start' in request.GET:
start = int(request.GET['start'])
else:
msg = "Please provide a start position"
logger.error(msg)
return HttpResponse(msg)
if 'end' in request.GET:
end = int(request.GET['end'])
else:
msg = "Please provide an end position"
logger.error(msg)
return HttpResponse(msg)
item = models.get(uuid)
try:
profile = item.get_profile(seq, zoom, ["mean"], start, end)
except AttributeError as e:
#return HttpResponse("_FileServerItem with UUID [" + uuid + "] was not found")
return HttpResponse(e.message)
return HttpResponse(profile, mimetype='application/json')
def test_get_bigbeditem(self):
bigbed_item = models.BigBEDItem.objects.create(
data_file=self.bigbed_file)
self.assertEqual(models.get(bigbed_item), bigbed_item)
def test_get_bigbeditem(self):
bigbed_item = models.BigBEDItem.objects.create(
data_file=self.bigbed_file)
self.assertEqual(models.get(bigbed_item), bigbed_item)
