def run_wrapper(self, evidence):
"""Wrapper to manage TurbiniaTaskResults and exception handling.
This wrapper should be called to invoke the run() methods so it can handle
the management of TurbiniaTaskResults and the exception handling. Otherwise
details from exceptions in the worker cannot be propagated back to the
Turbinia TaskManager.
This method should handle (in no particular order):
- Exceptions thrown from run()
- Verifing valid TurbiniaTaskResult object is returned
- Check for bad results (non TurbiniaTaskResults) returned from run()
- Auto-close results that haven't been closed
- Verifying that the results are serializeable
- Locking to make sure only one task is active at a time
Args:
evidence: Evidence object
Returns:
A TurbiniaTaskResult object
"""
with filelock.FileLock(config.LOCK_FILE):
log.info('Starting Task {0:s} {1:s}'.format(self.name, self.id))
original_result_id = None
try:
self.result = self.setup(evidence)
original_result_id = self.result.id
if self.turbinia_version != turbinia.__version__:
msg = 'Worker V-{0:s} and server V-{1:s} version do not match'.format(
self.turbinia_version, turbinia.__version__)
log.error(msg)
self.result.log(msg)
self.result.set_error(msg)
self.result.status = msg
return self.result
self._evidence_config = evidence.config
self.result = self.run(evidence, self.result)
# pylint: disable=broad-except
except Exception as e:
msg = '{0:s} Task failed with exception: [{1!s}]'.format(
self.name, e)
log.error(msg)
log.error(traceback.format_exc())
if self.result:
self.result.log(msg)
self.result.log(traceback.format_exc())
if hasattr(e, 'message'):
self.result.set_error(e.message,
traceback.format_exc())
else:
self.result.set_error(e.__class__,
traceback.format_exc())
self.result.status = msg
else:
log.error(
'No TurbiniaTaskResult object found after task execution.'
)
self.result = self.validate_result(self.result)
# Trying to close the result if possible so that we clean up what we can.
# This has a higher likelihood of failing because something must have gone
# wrong as the Task should have already closed this.
if self.result and not self.result.closed:
msg = 'Trying last ditch attempt to close result'
log.warning(msg)
self.result.log(msg)
if self.result.status:
status = self.result.status
else:
status = 'No previous status'
msg = (
'Task Result was auto-closed from task executor on {0:s} likely '
'due to previous failures. Previous status: [{1:s}]'.
format(self.result.worker_name, status))
self.result.log(msg)
try:
self.result.close(self, False, msg)
# Using broad except here because lots can go wrong due to the reasons
# listed above.
# pylint: disable=broad-except
except Exception as e:
log.error(
'TurbiniaTaskResult close failed: {0!s}'.format(e))
if not self.result.status:
self.result.status = msg
# Check the result again after closing to make sure it's still good.
self.result = self.validate_result(self.result)
if original_result_id != self.result.id:
log.debug(
'Result object {0:s} is different from original {1!s} after task '
'execution which indicates errors during execution'.format(
self.result.id, original_result_id))
else:
log.debug(
'Returning original result object {0:s} after task execution'.
format(self.result.id))
# TODO(aarontp): Find a better way to ensure this gets unset.
self.output_manager = None
return self.result
def main():
parser = argparse.ArgumentParser(description='recreate directory '
'structure just '
'from files that match'
'certain criteria')
parser.add_argument('sourceDir')
parser.add_argument('destDir')
parser.add_argument('-k', '--keyword', required=True, action='append',
help='EXIF keyword(s)')
parser.add_argument('-s', '--suffix', action='append',
help='Suffix(es) of the files to work on')
parser.add_argument('-S', '--stripcount', default=1,
help='Number of path components to strip from '
'sourceDir')
parser.add_argument('--symlink', action='store_true',
help='create symlinks instead of copying files')
parser.add_argument('-l', '--loglevel', action=LogLevelAction,
help='Set log level (e.g. \"ERROR\")',
default=logging.INFO)
try:
args = parser.parse_args()
except ValueError as e:
print("Argument parsing failed: {}".format(e), file=sys.stderr)
sys.exit(1)
logger = logging.getLogger(__package__)
logger.setLevel(args.loglevel)
handler = logging.StreamHandler()
logger.addHandler(handler)
if not args.keyword or len(args.keyword) == 0:
logger.error("No keywords specified")
sys.exit(1)
check_dir(args.sourceDir)
check_dir(args.destDir)
docopy = True
if args.symlink:
docopy = False
lock = filelock.FileLock(os.path.join(tempfile.gettempdir(),
"{}.lock".
format(os.path.
basename(sys.argv[0]))))
try:
with lock.acquire(timeout=0):
# To prevent iptcinfo3 from emitting warnings on files without
# IPTC data.
iptc_logger = logging.getLogger('iptcinfo')
iptc_logger.setLevel(logging.ERROR)
backup_dir(args.sourceDir, args.destDir, docopy,
args.keyword, args.stripcount, args.suffix)
except filelock.Timeout:
logger.warning("Already running, exiting.")
sys.exit(1)
logging.shutdown()
def main():
args = make_args()
config = configparser.ConfigParser()
for path in sum(args.config, []):
wuji.config.load(config, path)
for cmd in sum(args.modify, []):
wuji.config.modify(config, cmd)
with open(os.path.expanduser(os.path.expandvars(args.logging)), 'r') as f:
logging.config.dictConfig(yaml.load(f))
if args.log is None:
args.log = wuji.config.digest(config)
ea = functools.reduce(lambda x, wrap: wrap(x), map(wuji.parse.instance, config.get('ea', 'optimizer').split('\t')))
root = os.path.expanduser(os.path.expandvars(config.get('model', 'root')))
os.makedirs(root, exist_ok=True)
with filelock.FileLock(root + '.lock', 0):
if args.delete:
logging.warning('delete model directory: ' + root)
shutil.rmtree(root, ignore_errors=True)
os.makedirs(root, exist_ok=True)
logging.info('cd ' + os.getcwd() + ' && ' + subprocess.list2cmdline([sys.executable] + sys.argv))
logging.info('sys.path=' + ' '.join(sys.path))
ray.init(**wuji.ray.init(config))
timer = {key[5:]: (lambda: False) if value is None else wuji.counter.Time(humanfriendly.parse_timespan(value)) for key, value in vars(args).items() if key.startswith('time_')}
if isinstance(timer['track'], wuji.counter.Time):
tracemalloc.start()
kwargs = {key: value for key, value in vars(args).items() if key not in {'config', 'modify'}}
kwargs['root'] = root
try:
seed = config.getint('config', 'seed')
wuji.random.seed(seed, prefix=f'seed={seed}: ')
kwargs['seed'] = seed
except configparser.NoOptionError:
pass
stopper = functools.reduce(lambda x, wrap: wrap(x), map(wuji.parse.instance, config.get('ea', 'stopper').split('\t')))
with contextlib.closing(ea(config, **kwargs)) as ea, contextlib.closing(stopper(ea)) as stopper, tqdm.tqdm(initial=ea.cost) as pbar, filelock.FileLock(root + '.lock', 0):
root_log = ea.kwargs['root_log']
os.makedirs(root_log, exist_ok=True)
with open(root_log + '.ini', 'w') as f:
config.write(f)
logging.info(f'CUDA_VISIBLE_DEVICES= pushd "{os.path.dirname(root_log)}" && tensorboard --logdir {os.path.basename(root_log)}; popd')
try:
logging.info(', '.join([key + '=' + humanfriendly.format_size(functools.reduce(lambda x, wrap: wrap(x), map(wuji.parse.instance, encoding['agent']['eval'])).nbytes(random.choice(ea.population)['decision'][key]) if 'agent' in encoding else random.choice(ea.population)['decision'][key].nbytes) for key, encoding in ea.context['encoding'].items()]))
except:
traceback.print_exc()
try:
while True:
outcome = ea(pbar=pbar)
if timer['track']():
snapshot = tracemalloc.take_snapshot()
stats = snapshot.statistics('lineno')
for stat in stats[:10]:
print(stat)
if timer['gc']():
gc.collect()
logging.warning('gc.collect')
if stopper(outcome):
break
logging.info('stopped')
except KeyboardInterrupt:
logging.warning('keyboard interrupted')
ea.recorder(force=True)
path = os.path.join(root, f'{ea.cost}.pth')
logging.info(path)
torch.save(ea.__getstate__(), path)
try:
wuji.file.tidy(root, config.getint('model', 'keep'))
except configparser.NoOptionError:
logging.warning(f'keep all models in {root}')
def __init__(self, **kwargs):
super().__init__(**kwargs)
self.do_stemming = True # turn off as needed
self.do_lemmatization = True # turn off as needed
self.remove_stopwords = True # turn off as needed
import nltk
nltk_data_path = os.path.join(user_dir(),
config.contrib_env_relative_directory,
"nltk_data")
nltk_temp_path = os.path.join(user_dir(), "nltk_data")
nltk.data.path.append(nltk_data_path)
os.makedirs(nltk_data_path, exist_ok=True)
nltk_download_lock_file = os.path.join(nltk_data_path, "nltk.lock")
with filelock.FileLock(nltk_download_lock_file):
nltk.download('stopwords', download_dir=nltk_data_path)
nltk.download('punkt', download_dir=nltk_data_path)
nltk.download('averaged_perceptron_tagger',
download_dir=nltk_data_path)
nltk.download('maxent_treebank_pos_tagger',
download_dir=nltk_data_path)
nltk.download('wordnet', download_dir=nltk_data_path)
nltk.download('sonoritysequencing', download_dir=nltk_data_path)
# download resources for stemming if needed
if self.do_stemming:
try:
self.stemmer = nltk.stem.porter.PorterStemmer()
self.stemmer.stem("test")
except LookupError:
os.makedirs(nltk_data_path, exist_ok=True)
os.makedirs(nltk_temp_path, exist_ok=True)
tokenizer_path = os.path.join(nltk_data_path, "tokenizers")
os.makedirs(tokenizer_path, exist_ok=True)
file1 = download(
"https://raw.githubusercontent.com/nltk/nltk_data/gh-pages/packages/tokenizers/punkt.zip",
dest_path=nltk_temp_path)
self.unzip_file(file1, tokenizer_path)
self.atomic_copy(file1, tokenizer_path)
self.stemmer = nltk.stem.porter.PorterStemmer()
self.stemmer.stem("test")
# download resources for lemmatization if needed
if self.do_lemmatization:
try:
from nltk.corpus import wordnet
self.lemmatizer = nltk.stem.WordNetLemmatizer()
self.pos_tagger = nltk.pos_tag
self.lemmatizer.lemmatize("test", wordnet.NOUN)
self.pos_tagger("test")
except LookupError:
os.makedirs(nltk_data_path, exist_ok=True)
os.makedirs(nltk_temp_path, exist_ok=True)
tagger_path = os.path.join(nltk_data_path, "taggers")
corpora_path = os.path.join(nltk_data_path, "corpora")
os.makedirs(tagger_path, exist_ok=True)
os.makedirs(corpora_path, exist_ok=True)
file1 = download(
"https://raw.githubusercontent.com/nltk/nltk_data/gh-pages/packages/taggers/averaged_perceptron_tagger.zip",
dest_path=nltk_temp_path)
file2 = download(
"https://raw.githubusercontent.com/nltk/nltk_data/gh-pages/packages/taggers/maxent_treebank_pos_tagger.zip",
dest_path=nltk_temp_path)
file3 = download(
"https://raw.githubusercontent.com/nltk/nltk_data/gh-pages/packages/corpora/wordnet.zip",
dest_path=nltk_temp_path)
self.unzip_file(file1, tagger_path)
self.unzip_file(file2, tagger_path)
self.unzip_file(file3, corpora_path)
self.atomic_copy(file1, tagger_path)
self.atomic_copy(file2, tagger_path)
self.atomic_copy(file3, corpora_path)
from nltk.corpus import wordnet
self.lemmatizer = nltk.stem.WordNetLemmatizer()
self.pos_tagger = nltk.pos_tag
self.lemmatizer.lemmatize("test", wordnet.NOUN)
self.pos_tagger("test")
self.wordnet_map = {
"N": wordnet.NOUN,
"V": wordnet.VERB,
"J": wordnet.ADJ,
"R": wordnet.ADV,
"O": wordnet.NOUN
}
# download resources for stopwords if needed
if self.remove_stopwords:
try:
self.stopwords = set(nltk.corpus.stopwords.words('english'))
except LookupError:
os.makedirs(nltk_data_path, exist_ok=True)
os.makedirs(nltk_temp_path, exist_ok=True)
corpora_path = os.path.join(nltk_data_path, "corpora")
os.makedirs(corpora_path, exist_ok=True)
file1 = download(
"https://raw.githubusercontent.com/nltk/nltk_data/gh-pages/packages/corpora/stopwords.zip",
dest_path=nltk_temp_path)
self.unzip_file(file1, corpora_path)
self.atomic_copy(file1, corpora_path)
self.stopwords = set(nltk.corpus.stopwords.words('english'))
def update_from_ldap(server, username, password, schema, pull):
pid = os.getpid()
print >> sys.stderr, '[%5d] Aquire lock...' % pid
lock = filelock.FileLock("/tmp/ldap_update.lock")
try:
with lock.acquire(timeout=10):
print >> sys.stderr, '[%5d] Got lock, now running ldap update...' % pid
print >> sys.stderr, '[%5d] Server: %s, Username: %s, Schema: %s' % (
pid, server, username, schema)
if pull:
os.environ['LDAP_USERNAME'] = username
os.environ['LDAP_PASSWORD'] = password
os.environ['LDAP_SERVER'] = server
os.environ['LDAP_BASE_DN'] = schema
command = '/usr/bin/python /app/scripts/ldapdump.py'
print >> sys.stderr, '[%5d] Execute: %s' % (pid, command)
ret = os.system(command)
os.environ['LDAP_USERNAME'] = ''
os.environ['LDAP_PASSWORD'] = ''
os.environ['LDAP_SERVER'] = ''
os.environ['LDAP_BASE_DN'] = ''
if ret != 0:
print >> sys.stderr, '[%5d] Dump failed, aborting' % (pid)
return None
command = '/usr/bin/python /app/scripts/ldapmunge.py'
print >> sys.stderr, '[%5d] Execute: %s' % (pid, command)
if 0 != os.system(command):
print >> sys.stderr, '[%5d] Munge failed, aborting' % (pid)
return None
records = json.load(open(USER_JSON_FILENAME))
total_records = len(records)
es = Elasticsearch("http://*****:*****@/app/scripts/index.json"'''
if 0 != os.system(command):
print >> sys.stderr, '[%5d] Upload of index failed, aborting' % (
pid)
return None
print >> sys.stderr, "[%5d] Uploading %d indices to elasticsearch..." % (
pid, total_records)
for record in records:
username = record['username']
es.create(index=INDEX_NAME,
doc_type=DOC_TYPE,
body=record,
id=username)
print >> sys.stderr, '[%5d] Done.' % pid
except filelock.Timeout:
print >> sys.stderr, '[%5d] Failed to aquire lock, skipping task.' % pid
return None
def cached_download(
url,
path=None,
md5=None,
quiet=False,
postprocess=None,
proxy=None,
speed=None,
):
"""Cached downlaod from URL.
Parameters
----------
url: str
URL. Google Drive URL is also supported.
path: str, optional
Output filename. Default is basename of URL.
md5: str, optional
Expected MD5 for specified file.
quiet: bool
Suppress terminal output. Default is False.
postprocess: callable
Function called with filename as postprocess.
proxy: str
Proxy.
speed: float
Download byte size per second (e.g., 256KB/s = 256 * 1024).
Returns
-------
path: str
Output filename.
"""
if path is None:
path = (url.replace("/", "-SLASH-").replace(":", "-COLON-").replace(
"=", "-EQUAL-").replace("?", "-QUESTION-"))
path = osp.join(cache_root, path)
# check existence
if osp.exists(path) and not md5:
if not quiet:
print("File exists: {}".format(path))
return path
elif osp.exists(path) and md5:
try:
assert_md5sum(path, md5, quiet=quiet)
return path
except AssertionError as e:
print(e, file=sys.stderr)
# download
lock_path = osp.join(cache_root, "_dl_lock")
try:
os.makedirs(osp.dirname(path))
except OSError:
pass
temp_root = tempfile.mkdtemp(dir=cache_root)
try:
temp_path = osp.join(temp_root, "dl")
if not quiet:
msg = "Cached Downloading"
if path:
msg = "{}: {}".format(msg, path)
else:
msg = "{}...".format(msg)
print(msg, file=sys.stderr)
download(url, temp_path, quiet=quiet, proxy=proxy, speed=speed)
with filelock.FileLock(lock_path):
shutil.move(temp_path, path)
except Exception:
shutil.rmtree(temp_root)
raise
if md5:
assert_md5sum(path, md5, quiet=quiet)
# postprocess
if postprocess is not None:
postprocess(path)
return path
def device_lock(serialno, timeout=3600):
return filelock.FileLock(device_lock_path(serialno), timeout=timeout)
nodbconnection = False
except:
ntry +=1
if (ntry % 5 == 1): print "Failed to make lariat_prd connection for",ntry,"times... sleep for 5 minutes"
time.sleep(300)
try:
os.chdir(sys.argv[1])
datadir=sys.argv[1]
if (datadir[len(datadir)-1] != '/'): datadir = datadir+'/'
except:
print "Data directory: ", datadir, "not found - please restart program"
sys.exit(1)
#
# check for file lock
#
lock = filelock.FileLock(datadir+"XporterInProgress")
try:
lock.acquire(timeout=5)
except filelock.Timeout as err:
exit(0)
#
# Run file.Complete.py to check for new files
#
fnull = open("/dev/null","w")
subprocess.call([Xporterdir+"/findComplete.sh",datadir])
#
# Begin data loop
#
switch = True
count = 0
fextension = ".complete"
# 强行杀掉Rclone
def force_kill_rclone_subproc_by_parent_pid(sh_pid):
if psutil.pid_exists(sh_pid):
sh_proc = psutil.Process(sh_pid)
logger.info('Get The Process information - pid: %s, name: %s' %
(sh_pid, sh_proc.name()))
for child_proc in sh_proc.children():
if child_proc.name().find('rclone') > -1:
logger.info('Force Killed rclone process which pid: %s' %
child_proc.pid)
child_proc.kill()
if __name__ == '__main__':
# 单例模式 (￣y▽,￣)╭
instance_check = filelock.FileLock(instance_lock_path)
with instance_check.acquire(timeout=0):
# 加载account信息
sa_jsons = glob.glob(os.path.join(sa_json_folder, '*.json'))
if len(sa_jsons) == 0:
logger.error('No Service Account Credentials JSON file exists.')
exit(1)
# 加载instance配置
if os.path.exists(instance_config_path):
logger.info('Instance config exist, Load it...')
config_raw = open(instance_config_path).read()
instance_config = json.loads(config_raw)
# 对上次记录的pid信息进行检查
if 'last_pid' in instance_config:
def test_execution_one_file_extract(
self,
cleandir,
shared_datadir,
simpleserver,
pyu,
custom_dir,
port,
windowed,
split_version,
):
data_dir = shared_datadir / "update_repo_extract"
pyu.setup()
# We are moving all of the files from the deploy directory to the
# cwd. We will start a simple http server to use for updates
with ChDir(data_dir):
simpleserver.start(port)
with open("pyu.log", "w") as f:
f.write("")
cmd = "python build_onefile_extract.py %s %s %s %s" % (
custom_dir,
port,
windowed,
split_version,
)
os.system(cmd)
# Moving all files from the deploy directory to the cwd
# since that is where we will start the simple server
deploy_dir = os.path.join("pyu-data", "deploy")
assert os.path.exists(deploy_dir)
test_cwd = os.getcwd()
with ChDir(deploy_dir):
files = os.listdir(os.getcwd())
for f in files:
if f == ".DS_Store":
continue
shutil.move(f, test_cwd)
app_name = "Acme"
if sys.platform == "win32":
app_name += ".exe"
app_run_command = app_name
if sys.platform != "win32":
app_run_command = "./{}".format(app_name)
if sys.platform == "darwin" and windowed:
app_run_command = "./{}.app/Contents/MacOS/{}".format(
app_name, app_name)
app_name = "{}.app".format(app_name)
if custom_dir:
# update with custom_dir is multiprocessing-safe
lock_path = "pyu.lock"
else:
if not os.path.exists(appdirs.user_data_dir(APP_NAME)):
os.makedirs(appdirs.user_data_dir(APP_NAME))
lock_path = os.path.join(appdirs.user_data_dir(APP_NAME),
"pyu.lock")
update_lock = filelock.FileLock(lock_path, LOCK_TIMEOUT)
output_file = "version1.txt"
with update_lock.acquire(LOCK_TIMEOUT, 5):
count = 0
while count < 5:
# Call the binary to self update
subprocess.call(app_run_command, shell=True)
if os.path.exists(output_file):
break
count += 1
print("Retrying app launch")
# Allow enough time for update process to complete.
time.sleep(AUTO_UPDATE_PAUSE)
# Call the binary to ensure it's
# the updated binary
subprocess.call(app_run_command, shell=True)
simpleserver.stop()
# Detect if it was an overwrite error
assert os.path.exists(app_name)
assert os.path.exists(output_file)
with open(output_file, "r") as f:
output = f.read().strip()
assert output == "4.2"
if os.path.exists(app_name):
if os.path.isdir(app_name):
remove_any(app_name)
else:
remove_any(app_name)
if os.path.exists(output_file):
remove_any(output_file)
#!/usr/bin/env python3
import os
import shutil
import subprocess
import filelock
import sys
from datetime import datetime
extract_location = '/dev/shm/gcc-bisect-bin/'
install_location = '/home/marxin/DATA/gcc-binaries/'
lock = filelock.FileLock('/tmp/gcc_build_binary.lock')
todo = open('/tmp/all').readlines()
for i, line in enumerate(todo):
revision = line.strip()
print('%d/%d: %s' % (i, len(todo), revision))
archive = os.path.join(install_location, revision + '.7z')
if os.path.exists(archive):
with lock:
shutil.rmtree(extract_location, ignore_errors=True)
os.mkdir(extract_location)
start = datetime.now()
size_before = os.path.getsize(archive)
cmd = '7z x %s -o%s -aoa' % (archive, extract_location)
subprocess.check_output(cmd, shell=True)
tarfile = os.path.join(install_location, revision + '.tar')
if args.ignore_errors:
ignore_errors = args.ignore_errors
else:
try:
ignore_errors = config["ignore_errors"]
except KeyError:
pass
logger.debug("Ignored projects: {}".format(ignore_errors))
try:
os.chdir("/")
except OSError as e:
logger.error("cannot change working directory to /", exc_info=True)
sys.exit(1)
lock = filelock.FileLock(
os.path.join(tempfile.gettempdir(), "opengrok-sync.lock"))
try:
with lock.acquire(timeout=0):
pool = Pool(processes=int(args.workers))
if args.projects:
dirs_to_process = args.projects
elif args.indexed:
indexed_projects = list_indexed_projects(logger, uri)
if indexed_projects:
for line in indexed_projects:
dirs_to_process.append(line.strip())
else:
logger.error("cannot get list of projects")
sys.exit(1)
def step_over_diffs(result_dir, action, display=True):
processed = False
dname = os.path.dirname(iris.tests.__file__)
lock = filelock.FileLock(os.path.join(dname, _POSTFIX_LOCK))
if action in ['first', 'last']:
kind = action
elif action in ['similar', 'different']:
kind = 'most {}'.format(action)
else:
emsg = 'Unknown action: {!r}'
raise ValueError(emsg.format(action))
if display:
msg = ('\nComparing the {!r} expected image with '
'the test result image.')
print(msg.format(kind))
# Remove old image diff results.
target = os.path.join(result_dir, '*{}'.format(_POSTFIX_DIFF))
for fname in glob(target):
os.remove(fname)
with lock.acquire(timeout=30):
# Load the imagerepo.
repo_fname = os.path.join(dname, _POSTFIX_JSON)
with open(repo_fname, 'rb') as fi:
repo = json.load(codecs.getreader('utf-8')(fi))
# Filter out all non-test result image files.
target_glob = os.path.join(result_dir, 'result-*.png')
results = []
for fname in sorted(glob(target_glob)):
# We only care about PNG images.
try:
im = Image.open(fname)
if im.format != 'PNG':
# Ignore - it's not a png image.
continue
except IOError:
# Ignore - it's not an image.
continue
results.append(fname)
count = len(results)
for count_index, result_fname in enumerate(results):
key = os.path.splitext('-'.join(result_fname.split('-')[1:]))[0]
try:
# Calculate the test result perceptual image hash.
phash = imagehash.phash(Image.open(result_fname),
hash_size=iris.tests._HASH_SIZE)
uris = repo[key]
hash_index, distance = _calculate_hit(uris, phash, action)
uri = uris[hash_index]
except KeyError:
wmsg = 'Ignoring unregistered test result {!r}.'
warnings.warn(wmsg.format(key))
continue
with temp_png(key) as expected_fname:
processed = True
resource = requests.get(uri)
if resource.status_code == 200:
with open(expected_fname, 'wb') as fo:
fo.write(resource.content)
else:
# Perhaps the uri has not been pushed into the repo yet,
# so check if a local "developer" copy is available ...
local_fname = os.path.join(result_dir,
os.path.basename(uri))
if not os.path.isfile(local_fname):
emsg = 'Bad URI {!r} for test {!r}.'
raise ValueError(emsg.format(uri, key))
else:
# The temporary expected filename has the test name
# baked into it, and is used in the diff plot title.
# So copy the local file to the exected file to
# maintain this helpfulness.
shutil.copy(local_fname, expected_fname)
try:
mcompare.compare_images(expected_fname,
result_fname,
tol=0)
except Exception as e:
if isinstance(e, ValueError) or \
isinstance(e, ImageComparisonFailure):
print('Could not compare {}: {}'.format(
result_fname, e))
continue
else:
# Propagate the exception, keeping the stack trace
raise
diff_fname = os.path.splitext(result_fname)[0] + _POSTFIX_DIFF
args = expected_fname, result_fname, diff_fname
if display:
msg = ('Image {} of {}: hamming distance = {} ' '[{!r}]')
status = msg.format(count_index + 1, count, distance, kind)
prefix = repo, key, repo_fname, phash, status
yield prefix + args
else:
yield args
if display and not processed:
print('\nThere are no iris test result images to process.\n')
self.make_master()
logging.info("切换状态为MASTER")
elif self.keepalived == "BACKUP":
self.make_slave()
logging.info("切换状态为BACKUP")
elif self.keepalived == "STOP":
self.stop_mysql()
logging.info("切换状态为STOP")
else:
logging.error("keepalived配置有误或脚本执行异常")
self.conn.close()
if __name__ == "__main__":
lock = filelock.FileLock("/tmp/kps.txt")
if lock:
logging.info("ZST Get Lock.start!!!")
try:
with lock.acquire(timeout=5):
pass
except filelock.timeout:
print "timeout"
logging.warning("get file lock timeout")
mysql = {
"url": config.dbhost,
"port": config.dbport,
"username": config.dbuser,
"password": config.dbpassword,
"dbname": "mysql",
'avr-size -A %s | grep Total | cut -f2- -d " "' % target,
shell=True)
size = int(size.strip())
if size > maxsize:
exit(FIRMWARE_SIZE_TOO_BIG)
# Copy binary to the binaries directory
shutil.move(target, path)
if os.path.isfile(errpath):
print filename
exit(COMPILATION_ERROR)
if os.path.isfile(path):
print filename
exit(0)
lockpath = path + ".lock"
lock = filelock.FileLock(lockpath)
try:
with lock.acquire(timeout=60 * 60):
if not os.path.isfile(path):
build_firmware(path)
except filelock.Timeout:
print filename
exit(COMPILATION_ERROR)
print filename
exit(0)
data.setdefault(mirror_name, {
"description": "",
"update-frequency": 0,
"updates": [],
})
data[mirror_name]["updates"].append({
"start_date":
start_date.strftime("%Y-%m-%d %H:%M:%S"),
"end_date":
end_date.strftime("%Y-%m-%d %H:%M:%S"),
"duration": (end_date - start_date).total_seconds(),
"status":
status.returncode,
})
data[mirror_name]["updates"] = data[mirror_name]["updates"][-500:]
with open(MIRROR_DATA, "w") as f:
yaml.dump(data, f)
# open("MIRROR_", "a").write("You were the chosen one.")
try:
mirror_lock = filelock.FileLock(MIRROR_LOCK)
with mirror_lock.acquire(timeout=1):
do_sync(mirror_name, command)
except filelock.Timeout:
print(f"ERROR: cron job running or lock not released '{MIRROR_LOCK}'")
sys.exit(1)
def FitnessFunction(point, sample):
try:
tmpl = copy.deepcopy(config.RESULTS_TEMPLATE)
params = point
paramFile = '/eos/experiment/ship/user/ffedship/EA_V2/Shared/params' + str(
sample) + '_{}.root'.format(create_id(params))
geoinfoFile = paramFile.replace('params', 'geoinfo')
heavy = '/eos/experiment/ship/user/ffedship/EA_V2/Shared/heavy' + str(
sample) + '_{}'.format(create_id(params))
lockfile = paramFile + '.lock'
print heavy, lockfile
if os.path.exists(geoinfoFile):
geolockfile = geoinfoFile + '.lock'
lock = filelock.FileLock(geolockfile)
if not lock.is_locked:
with lock:
with open(geoinfoFile, 'r') as f:
length, weight = map(float,
f.read().strip().split(','))
tmpl['weight'] = weight
tmpl['length'] = length
while not os.path.exists(paramFile) and not os.path.exists(heavy):
lock = filelock.FileLock(lockfile)
if not lock.is_locked:
with lock:
tmpl['status'] = 'Acquired lock.'
tmp_paramFile = generate_geo(
paramFile.replace('.r', '.tmp.r'), params)
subprocess.call([
'python2',
'/afs/cern.ch/user/f/ffedship/private/EA_Muon_Shield_V2/get_geo.py',
'-g', tmp_paramFile, '-o', geoinfoFile
])
shutil.move(
'/eos/experiment/ship/user/ffedship/EA_V2/Shared/' +
os.path.basename(tmp_paramFile),
paramFile.replace('shared',
'output').replace('params', 'geo'))
with open(geoinfoFile, 'r') as f:
length, weight = map(float,
f.read().strip().split(','))
tmpl['weight'] = weight
tmpl['length'] = length
shutil.move(
'/eos/experiment/ship/user/ffedship/EA_V2/Geometry/' +
os.path.basename(tmp_paramFile), paramFile)
tmpl['status'] = 'Created geometry.'
print "Fitness Function Message: Geometry has been generated using config ", point
print "Fitness Function Message: Length ", length
print "Fitness Function Message: Weight ", weight
else:
sleep(60)
outFile = root_output_name
tmpl['status'] = 'Simulating...'
generate(inputFile=root_input_name,
paramFile=paramFile,
outFile=root_output_name,
seed=1,
nEvents=10000)
tmpl['status'] = 'Analysing...'
chain = r.TChain('cbmsim')
chain.Add(outFile)
xs = analyse(chain, 'hists.root')
tmpl['muons'] = len(xs)
tmpl['muons_w'] = sum(xs)
print "muons: ", tmpl['muons']
print "muons_w: ", tmpl['muons_w']
print "Fitness", FCN(tmpl['weight'], np.array(xs), tmpl['length'])[0]
XS_output = open(csv_output_name, "w")
XS_write = csv.writer(XS_output)
XS_write.writerow([tmpl['weight'], tmpl['length'], tmpl['muons_w']])
XS_output.close()
tmpl['error'] = None
tmpl['status'] = 'Done.'
os.remove(root_output_name)
except:
print "EA_LL_FCN Message: Wrong geometry, operation rejected, negative values assigned"
XS_output = open(csv_output_name, "w")
XS_write = csv.writer(XS_output)
XS_write.writerow([100000000, 10000000, 100000000])
XS_output.close()
def __init__(self, lockname):
super(CrdsFileLock, self).__init__(config.get_crds_lockpath(lockname))
self._lock = filelock.FileLock(self.lockname)
import base58
import filelock
import json
with filelock.FileLock("key.lock", timeout=10):
try:
with open("key.txt", "r") as file:
key_list = json.load(file)
except:
key_list = []
with filelock.FileLock("block.lock", timeout=10):
try:
with open("block.txt", "r") as file:
block_list = json.load(file)
except:
block_list = []
old_in = []
old_out = []
for block in block_list:
for tx in block["tx"]:
old_in.append(tx["in"])
old_out.append(tx["out"])
unspent = []
unused = []
for key in key_list:
key_hex = base58.b58decode(key["public"]).hex()
if key_hex not in old_in:
if key_hex in old_out:
import json
import os
import logging
import filelock
import tempfile
from django.utils.functional import SimpleLazyObject
logger = logging.getLogger(__name__)
dirname = os.path.dirname(os.path.abspath(__file__))
GatesJsonFile = os.path.join(dirname, 'gates_lizhi.json')
GatesPyFile = os.path.join(dirname, 'biogate.py')
gates_updating_lock = filelock.FileLock(
os.path.join(tempfile.gettempdir(),
'biohub.biocircuit.gates.updating.lock'))
def get_d_gate(lizhi):
"""Get d_gate from gates_lizhi.json.
Parameters
----------
lizhi : dict
A string parsed from lizhi.json
Returns
-------
d_gate_d : dict
Record the 4 parameters.
def _save(self, name, content):
full_path = self.path(name)
# Create any intermediate directories that do not exist.
# Note that there is a race between os.path.exists and os.makedirs:
# if os.makedirs fails with EEXIST, the directory was created
# concurrently, and we can continue normally. Refs #16082.
directory = os.path.dirname(full_path)
if not os.path.exists(directory):
try:
if self.directory_permissions_mode is not None:
# os.makedirs applies the global umask, so we reset it,
# for consistency with file_permissions_mode behavior.
old_umask = os.umask(0)
try:
os.makedirs(directory, self.directory_permissions_mode)
finally:
os.umask(old_umask)
else:
os.makedirs(directory)
except OSError as e:
if e.errno != errno.EEXIST:
raise
if not os.path.isdir(directory):
raise IOError("%s exists and is not a directory." % directory)
# There's a potential race condition between get_available_name and
# saving the file; it's possible that two threads might return the
# same name, at which point all sorts of fun happens. So we need to
# try to create the file, but if it already exists we have to go back
# to get_available_name() and try again.
while True:
try:
# This file has a file path that we can move.
if hasattr(content, 'temporary_file_path'):
# file_move_safe(content.temporary_file_path(), full_path)
pass # TODO: move temporary file
# This is a normal uploadedfile that we can stream.
else:
# This fun binary flag incantation makes os.open throw an
# OSError if the file already exists before we open it.
flags = (os.O_WRONLY | os.O_CREAT | os.O_EXCL
| getattr(os, 'O_BINARY', 0))
# The current umask value is masked out by os.open!
fd = os.open(full_path, flags, 0o666)
_file = None
try:
lock = filelock.FileLock(full_path)
with lock.acquire():
file = io.FileIO(fd, 'wb', closefd=False)
r = content.read(4096)
while r:
file.write(r)
r = content.read(4096)
# for chunk in content.chunks():
# if _file is None:
# mode = 'wb' if isinstance(chunk, bytes) else 'wt'
# _file = os.fdopen(fd, mode)
# _file.write(chunk)
finally:
if _file is not None:
_file.close()
else:
os.close(fd)
except OSError as e:
if e.errno == errno.EEXIST:
# Ooops, the file exists. We need a new file name.
name = self.get_available_name(name)
full_path = self.path(name)
else:
raise
else:
# OK, the file save worked. Break out of the loop.
break
if self.file_permissions_mode is not None:
os.chmod(full_path, self.file_permissions_mode)
# Store filenames with forward slashes, even on Windows.
return str(name.replace('\\', '/'))
def __init__(
self,
chain: BlockChainService,
query_start_block: typing.BlockNumber,
default_registry: TokenNetworkRegistry,
default_secret_registry: SecretRegistry,
private_key_bin,
transport,
raiden_event_handler: 'RaidenEventHandler',
config,
discovery=None,
):
super().__init__()
if not isinstance(private_key_bin,
bytes) or len(private_key_bin) != 32:
raise ValueError('invalid private_key')
self.tokennetworkids_to_connectionmanagers = dict()
self.identifier_to_results: typing.Dict[typing.PaymentID,
AsyncResult, ] = dict()
self.chain: BlockChainService = chain
self.default_registry = default_registry
self.query_start_block = query_start_block
self.default_secret_registry = default_secret_registry
self.config = config
self.privkey = private_key_bin
self.address = privatekey_to_address(private_key_bin)
self.discovery = discovery
self.private_key = PrivateKey(private_key_bin)
self.pubkey = self.private_key.public_key.format(compressed=False)
self.transport = transport
self.blockchain_events = BlockchainEvents()
self.alarm = AlarmTask(chain)
self.raiden_event_handler = raiden_event_handler
self.stop_event = Event()
self.stop_event.set() # inits as stopped
self.wal = None
self.snapshot_group = 0
# This flag will be used to prevent the service from processing
# state changes events until we know that pending transactions
# have been dispatched.
self.dispatch_events_lock = Semaphore(1)
self.database_path = config['database_path']
if self.database_path != ':memory:':
database_dir = os.path.dirname(config['database_path'])
os.makedirs(database_dir, exist_ok=True)
self.database_dir = database_dir
# Prevent concurrent access to the same db
self.lock_file = os.path.join(self.database_dir, '.lock')
self.db_lock = filelock.FileLock(self.lock_file)
else:
self.database_path = ':memory:'
self.database_dir = None
self.lock_file = None
self.serialization_file = None
self.db_lock = None
self.event_poll_lock = gevent.lock.Semaphore()
def __init__(
self,
chain: BlockChainService,
query_start_block: typing.BlockNumber,
default_registry: TokenNetworkRegistry,
default_secret_registry: SecretRegistry,
private_key_bin,
transport,
config,
discovery=None,
):
if not isinstance(private_key_bin,
bytes) or len(private_key_bin) != 32:
raise ValueError('invalid private_key')
self.tokennetworkids_to_connectionmanagers = dict()
self.identifier_to_results = defaultdict(list)
self.chain: BlockChainService = chain
self.default_registry = default_registry
self.query_start_block = query_start_block
self.default_secret_registry = default_secret_registry
self.config = config
self.privkey = private_key_bin
self.address = privatekey_to_address(private_key_bin)
self.discovery = discovery
if config['transport_type'] == 'udp':
endpoint_registration_event = gevent.spawn(
discovery.register,
self.address,
config['external_ip'],
config['external_port'],
)
endpoint_registration_event.link_exception(
endpoint_registry_exception_handler)
self.private_key = PrivateKey(private_key_bin)
self.pubkey = self.private_key.public_key.format(compressed=False)
self.transport = transport
self.blockchain_events = BlockchainEvents()
self.alarm = AlarmTask(chain)
self.shutdown_timeout = config['shutdown_timeout']
self.stop_event = Event()
self.start_event = Event()
self.chain.client.inject_stop_event(self.stop_event)
self.wal = None
self.database_path = config['database_path']
if self.database_path != ':memory:':
database_dir = os.path.dirname(config['database_path'])
os.makedirs(database_dir, exist_ok=True)
self.database_dir = database_dir
# Prevent concurrent access to the same db
self.lock_file = os.path.join(self.database_dir, '.lock')
self.db_lock = filelock.FileLock(self.lock_file)
else:
self.database_path = ':memory:'
self.database_dir = None
self.lock_file = None
self.serialization_file = None
self.db_lock = None
if config['transport_type'] == 'udp':
# If the endpoint registration fails the node will quit, this must
# finish before starting the transport
endpoint_registration_event.join()
self.event_poll_lock = gevent.lock.Semaphore()
self.start()
def lock(self, key: str, timeout: Union[int, float] = 5) -> None:
""" Lock for the provided key """
with filelock.FileLock(self.get_file_path(key) + ".lock",
timeout=timeout):
yield
def add_local_prototype(prototypename):
AUTHOR_ = 'minemeld-web'
DESCRIPTION_ = 'Local prototype library managed via MineMeld WebUI'
try:
library_path, prototype = _local_library_path(prototypename)
except ValueError as e:
return jsonify(error={'message': str(e)}), 400
lock = filelock.FileLock('{}.lock'.format(library_path))
with lock.acquire(timeout=10):
if os.path.isfile(library_path):
with open(library_path, 'r') as f:
library_contents = yaml.safe_load(f)
if not isinstance(library_contents, dict):
library_contents = {}
if 'description' not in library_contents:
library_contents['description'] = DESCRIPTION_
if 'prototypes' not in library_contents:
library_contents['prototypes'] = {}
if 'author' not in library_contents:
library_contents['author'] = AUTHOR_
else:
library_contents = {
'author': AUTHOR_,
'description': DESCRIPTION_,
'prototypes': {}
}
try:
incoming_prototype = request.get_json()
except Exception as e:
return jsonify(error={'message': str(e)}), 400
new_prototype = {
'class': incoming_prototype['class'],
}
if 'config' in incoming_prototype:
try:
new_prototype['config'] = yaml.safe_load(
incoming_prototype['config']
)
except Exception as e:
return jsonify(error={'message': 'invalid YAML in config'}), 400
if 'developmentStatus' in incoming_prototype:
new_prototype['development_status'] = \
incoming_prototype['developmentStatus']
if 'nodeType' in incoming_prototype:
new_prototype['node_type'] = incoming_prototype['nodeType']
if 'description' in incoming_prototype:
new_prototype['description'] = incoming_prototype['description']
if 'indicatorTypes' in incoming_prototype:
new_prototype['indicator_types'] = incoming_prototype['indicatorTypes']
if 'tags' in incoming_prototype:
new_prototype['tags'] = incoming_prototype['tags']
library_contents['prototypes'][prototype] = new_prototype
with open(library_path, 'w') as f:
yaml.safe_dump(library_contents, f, indent=4, default_flow_style=False)
return jsonify(result='OK'), 200
DIFFICULTY = 4
try:
shutil.copy('trans.txt', 'peer_trans.txt')
except:
pass
dir = os.path.dirname(os.path.abspath(__file__))
try:
with open(os.path.join(dir, 'peer.txt'), 'r') as file:
peer_list = json.load(file)
except:
peer_list = []
with filelock.FileLock('block.lock', timeout=10):
try:
with open('block.txt', 'r') as file:
block_list = json.load(file)
except:
block_list = []
for peer in peer_list:
url = 'http://' + peer + '/block.txt'
try:
with urllib.request.urlopen(url) as file:
peer_block_list = json.load(file)
except:
peer_block_list = []
if len(block_list) < len(peer_block_list):
import asyncio
from Blogbot.IO import readData, getBlogProgress, appendBlogProgress, blogfilename, progressfilename
import telebot
import Blogbot.Scraper as Scraper
import Blogbot.telegram as telegram
import filelock
lock = filelock.FileLock(progressfilename + '.lock')
async def main():
telegram.send_text(telegram.logchat_id, 'Start seaching Blogs')
print('Start seaching Blogs')
tasks = [
(asyncio.create_task(Scraper.Nogi(2)), '乃木坂46'),
# (asyncio.create_task(Scraper.Keya()), "欅坂46"),
(asyncio.create_task(Scraper.Saku()), "櫻坂46"),
(asyncio.create_task(Scraper.Hina()), '日向坂46')
]
for task, group in tasks:
for blog in await task:
if blog.url not in getBlogProgress():
blobs = asyncio.create_task(blog.getImgBlobs())
print(blog.title, blog.name, blog.url)
telegram.send_text(telegram.logchat_id,
blog,
disable_web_page_preview=True)
if blog.name != "運営スタッフ":
# telegram.send_text(telegram.logchat_id, f'#{blog.name} 「{blog.title}」\n\n{blog.url}',
# disable_web_page_preview=True)
# for batch in await blobs:
import filelock
from mendertesting import MenderTesting
artifact_lock = filelock.FileLock("artifact_modification")
def build_conda_environment(conda_store, build):
"""Build a conda environment with set uid/gid/and permissions and
symlink the build to a named environment
"""
set_build_started(conda_store, build)
conda_prefix = build.build_path(conda_store)
os.makedirs(os.path.dirname(conda_prefix), exist_ok=True)
environment_prefix = build.environment_path(conda_store)
os.makedirs(os.path.dirname(environment_prefix), exist_ok=True)
conda_store.log.info(f"building conda environment={conda_prefix}")
try:
with utils.timer(conda_store.log, f"building {conda_prefix}"):
with tempfile.TemporaryDirectory() as tmpdir:
tmp_environment_filename = os.path.join(tmpdir, "environment.yaml")
with open(tmp_environment_filename, "w") as f:
yaml.dump(build.specification.spec, f)
if conda_store.serialize_builds:
with filelock.FileLock(
os.path.join(tempfile.tempdir, "conda-store.lock")
):
output = build_environment(
conda_store.conda_command,
tmp_environment_filename,
conda_prefix,
)
else:
output = build_environment(
conda_store.conda_command,
tmp_environment_filename,
conda_prefix,
)
utils.symlink(conda_prefix, environment_prefix)
# modify permissions, uid, gid if they do not match
stat_info = os.stat(conda_prefix)
permissions = conda_store.default_permissions
uid = conda_store.default_uid
gid = conda_store.default_gid
if permissions is not None and oct(stat.S_IMODE(stat_info.st_mode))[-3:] != str(
permissions
):
conda_store.log.info(
f"modifying permissions of {conda_prefix} to permissions={permissions}"
)
with utils.timer(conda_store.log, f"chmod of {conda_prefix}"):
utils.chmod(conda_prefix, permissions)
if (
uid is not None
and gid is not None
and (str(uid) != str(stat_info.st_uid) or str(gid) != str(stat_info.st_gid))
):
conda_store.log.info(
f"modifying permissions of {conda_prefix} to uid={uid} and gid={gid}"
)
with utils.timer(conda_store.log, f"chown of {conda_prefix}"):
utils.chown(conda_prefix, uid, gid)
packages = conda.conda_prefix_packages(conda_prefix)
build.size = utils.disk_usage(conda_prefix)
set_build_completed(conda_store, build, output.encode("utf-8"), packages)
except subprocess.CalledProcessError as e:
conda_store.log.exception(e)
set_build_failed(conda_store, build, e.output.encode("utf-8"))
raise e
except Exception as e:
conda_store.log.exception(e)
set_build_failed(conda_store, build, traceback.format_exc().encode("utf-8"))
raise e
#
# Technically, adding a handler to the logger is not necessary
# since log rotation is done above using doRollover() however
# it is done anyway in case the handler changes to use implicit
# rotation in the future.
#
logger.addHandler(handler)
# We want this to be logged to the log file (if any).
if project_config:
if project_config.get('disabled'):
logger.info("Project {} disabled, exiting".
format(args.project))
sys.exit(2)
lock = filelock.FileLock(os.path.join(tempfile.gettempdir(),
args.project + "-mirror.lock"))
try:
with lock.acquire(timeout=0):
proxy = config.get('proxy') if use_proxy else None
if prehook:
logger.info("Running pre hook")
if run_hook(logger, prehook,
os.path.join(source_root, args.project), proxy,
hook_timeout) != 0:
logger.error("pre hook failed")
logging.shutdown()
sys.exit(1)
#
# If one of the repositories fails to sync, the whole project sync
# is treated as failed, i.e. the program will return 1.