def test_get_methods(ws):
name = 'Method 1'
desc = 'Placeholder description.'
models.add_method(name, desc)
rsp = decode_json_string(ws.get('/methods').data)
assert [{'id':'XZOQ0-method-1', 'name':name, 'description':desc}] \
== rsp
def test_get_methods(ws):
name = 'Method 1'
desc = 'Placeholder description.'
models.add_method(name, desc)
rsp = decode_json_string(ws.get('/methods').data)
assert [{'id':'XZOQ0-method-1', 'name':name, 'description':desc}] \
== rsp
def test_get_stages(ws, sample_with_stages):
rsp = decode_json_string(ws.get('/projects/PqrX9/samples/OQn6Q/stages').data)
assert {'sample' : 'OQn6Q',
'token' : 'kyDbw',
'stages' : [{'id' : 'Drn1Q-1',
'method' : 'XZOQ0-x-ray-tomography',
'sample' : 'OQn6Q-sample-1',
'alt-id' : None,
'annotation' : 'Annotation 0'},
{'id' : 'bQ8bm-2',
'method' : 'XZOQ0-x-ray-tomography',
'sample' : 'OQn6Q-sample-1',
'alt-id' : None,
'annotation' : 'Annotation 1'}]} \
== rsp
def test_get_stages(ws, sample_with_stages):
rsp = decode_json_string(
ws.get('/projects/PqrX9/samples/OQn6Q/stages').data)
assert {'sample' : 'OQn6Q',
'token' : 'kyDbw',
'stages' : [{'id' : 'Drn1Q-1',
'method' : 'XZOQ0-x-ray-tomography',
'sample' : 'OQn6Q-sample-1',
'alt-id' : None,
'annotation' : 'Annotation 0'},
{'id' : 'bQ8bm-2',
'method' : 'XZOQ0-x-ray-tomography',
'sample' : 'OQn6Q-sample-1',
'alt-id' : None,
'annotation' : 'Annotation 1'}]} \
== rsp
def test_no_projects(ws):
rsp = ws.get('/projects')
assert [] == decode_json_string(rsp.data)
def test_sample_project_not_found(ws, sample):
rsp = ws.get('/projects/00000-project-X/samples')
assert http.HTTP_404_NOT_FOUND == rsp.status_code
def test_sample_not_found(ws, sample):
rsp = ws.get('projects/5QMVv/samples/invalid-sample')
assert http.HTTP_404_NOT_FOUND == rsp.status_code
def test_method_not_found(ws, sample_with_stages):
rsp = ws.get('/methods/invalid-method')
assert 404 == rsp.status_code
def test_get_sample_without_context(ws, sample):
rsp = decode_json_string(ws.get('/projects/PqrX9/samples').data)
assert [{'id' : 'OQn6Q-sample-1',
'name' : 'sample 1',
'project' : 'PqrX9-manhattan'}] \
== rsp
def test_1_projects(ws, sample):
rsp = decode_json_string(ws.get('/projects').data)
assert [{'id':'PqrX9-manhattan',
'name': 'Manhattan',
'sample-mask': 'man-###'}] \
== rsp
def test_get_project_without_context(ws, sample):
rsp = decode_json_string(ws.get('/projects/PqrX9').data)
assert {'id':'PqrX9-manhattan',
'name': 'Manhattan',
'sample-mask': 'man-###'} \
== rsp
def test_1_projects(ws, sample):
rsp = decode_json_string(ws.get('/projects').data)
assert [{'id':'PqrX9-manhattan',
'name': 'Manhattan',
'sample-mask': 'man-###'}] \
== rsp
def test_method_not_found(ws, sample_with_stages):
rsp = ws.get('/methods/invalid-method')
assert 404 == rsp.status_code
def test_get_sample(ws, sample_with_stages):
rsp = decode_json_string(ws.get('/projects/PqrX9/samples/OQn6Q').data)
assert {'id' : 'OQn6Q-sample-1',
'name' : 'sample 1',
'project' : 'PqrX9-manhattan'} \
== rsp
def test_get_sample(ws, sample_with_stages):
rsp = decode_json_string(ws.get('/projects/PqrX9/samples/OQn6Q').data)
assert {'id' : 'OQn6Q-sample-1',
'name' : 'sample 1',
'project' : 'PqrX9-manhattan'} \
== rsp
def test_no_projects(ws):
rsp = ws.get('/projects')
assert [] == decode_json_string(rsp.data)
def test_sample_not_found(ws, sample):
rsp = ws.get('projects/5QMVv/samples/invalid-sample')
assert http.HTTP_404_NOT_FOUND == rsp.status_code
def test_sample_project_not_found(ws, sample):
rsp = ws.get('/projects/00000-project-X/samples')
assert http.HTTP_404_NOT_FOUND == rsp.status_code
def test_get_sample_without_context(ws, sample):
rsp = decode_json_string(ws.get('/projects/PqrX9/samples').data)
assert [{'id' : 'OQn6Q-sample-1',
'name' : 'sample 1',
'project' : 'PqrX9-manhattan'}] \
== rsp
def test_get_project_without_context(ws, sample):
rsp = decode_json_string(ws.get('/projects/PqrX9').data)
assert {'id':'PqrX9-manhattan',
'name': 'Manhattan',
'sample-mask': 'man-###'} \
== rsp
def test_get_method(ws, sample_with_stages):
rsp = decode_json_string(ws.get('/methods/XZOQ0-x-ray-tomography').data)
assert {'id' : 'XZOQ0-x-ray-tomography',
'name' : 'X-ray tomography',
'description' : 'Placeholder description.'} \
== rsp
def test_get_method(ws, sample_with_stages):
rsp = decode_json_string(ws.get('/methods/XZOQ0-x-ray-tomography').data)
assert {'id' : 'XZOQ0-x-ray-tomography',
'name' : 'X-ray tomography',
'description' : 'Placeholder description.'} \
== rsp