def gui(self):
text_file = get_text_file()
self.text = open(text_file, 'r').readlines()
self.keys = self.text[0].split('\t')
self.gui_reset()
x_axis_selection = ComboBox()
y_axis_selection = ComboBox()
z_axis_selection = ComboBox()
epsilon = QDoubleSpinBox()
epsilon.setDecimals(2)
epsilon.setSingleStep(1)
min_neighbors = QDoubleSpinBox()
min_neighbors.setDecimals(2)
min_neighbors.setSingleStep(1)
min_cluster = QDoubleSpinBox()
min_cluster.setDecimals(2)
min_cluster.setSingleStep(1)
simulate_check = CheckBox()
axis_creator(x_axis_selection,
y_axis_selection,
z_axis_selection,
choices=self.keys)
self.items.append({
'name': 'x_axis_selection',
'string': 'x axis',
'object': x_axis_selection
})
self.items.append({
'name': 'y_axis_selection',
'string': 'y axis',
'object': y_axis_selection
})
self.items.append({
'name': 'z_axis_selection',
'string': 'z axis',
'object': z_axis_selection
})
self.items.append({
'name': 'epsilon',
'string': 'Epsilon',
'object': epsilon
})
self.items.append({
'name': 'min_neighbors',
'string': 'Minimum neighbors to consider a point',
'object': min_neighbors
})
self.items.append({
'name': 'min_cluster',
'string': 'Minimum Cluster Density',
'object': min_cluster
})
self.items.append({
'name': 'simulate_check',
'string': 'Simulate Center Proximities',
'object': simulate_check
})
super().gui()
self.ui.setGeometry(QRect(150, 50, 150, 130))
def gui(self):
self.gui_reset()
#combobox
inputChoice = ComboBox()
inputChoice.addItem('Current Window')
inputChoice.addItem('Numpy Array')
inputChoice.addItem('Batch Process')
#checkbox
self.keepOriginalWindow = CheckBox()
self.keepOriginalWindow.setValue(False)
#populate GUI
self.items.append({
'name': 'inputChoice',
'string': 'Choose Input Data:',
'object': inputChoice
})
self.items.append({
'name': 'keepOriginalWindow',
'string': 'Keep Original Window',
'object': self.keepOriginalWindow
})
super().gui()
def gui(self):
self.gui_reset()
nSteps = pg.SpinBox(int=True, step=1)
first_volume = pg.SpinBox(int=True, step=1)
nVolumes = pg.SpinBox(int=True, step=1)
nVolumes.setMinimum(1)
ratio_type = ComboBox()
ratio_type.addItem('average')
ratio_type.addItem('standard deviation')
self.items.append({
'name': 'nSteps',
'string': 'Number of steps per volume',
'object': nSteps
})
self.items.append({
'name': 'first_volume',
'string': 'First Volume',
'object': first_volume
})
self.items.append({
'name': 'nVolumes',
'string': 'Number of Volumes',
'object': nVolumes
})
self.items.append({
'name': 'ratio_type',
'string': 'Ratio Type',
'object': ratio_type
})
super().gui()
def gui(self):
self.gui_reset()
#combobox
versionChoice = ComboBox()
#versionChoice.addItem('synapse3D')
#versionChoice.addItem('synapse3D_batch')
versionChoice.addItem('synapse3D_version2')
versionChoice.addItem('synapse3D_version2_batch')
#versionChoice.addItem('synapse')
#populate GUI
self.items.append({
'name': 'version',
'string': 'Choose Version:',
'object': versionChoice
})
super().gui()
def gui(self):
self.gui_reset()
#combobox
inputChoice = ComboBox()
inputChoice.addItem('Current Window')
inputChoice.addItem('Load file')
inputChoice.addItem('Numpy Array')
inputChoice.addItem('Batch Process')
#checkbox
self.keepOriginalWindow = CheckBox()
self.keepOriginalWindow.setValue(False)
self.preProcess = CheckBox()
self.preProcess.setValue(g.settings['volumeSlider']['preProcess'])
self.framesPerVolume = pg.SpinBox(int=True, step=1)
self.framesPerVolume.setValue(
g.settings['volumeSlider']['slicesPerVolume'])
self.framesRemoved = pg.SpinBox(int=True, step=1)
self.framesRemoved.setValue(
g.settings['volumeSlider']['slicesDeletedPerVolume'])
self.framesRemovedStart = pg.SpinBox(int=True, step=1)
self.framesRemovedStart.setValue(
g.settings['volumeSlider']['slicesDeletedPerMovie'])
self.overlay = CheckBox()
self.overlay.setValue(g.settings['volumeSlider']['overlay'])
self.overlayStart = pg.SpinBox(int=True, step=1)
self.overlayStart.setValue(g.settings['volumeSlider']['overlayStart'])
#populate GUI
self.items.append({
'name': 'inputChoice',
'string': 'Choose Input Data:',
'object': inputChoice
})
self.items.append({
'name': 'keepOriginalWindow',
'string': 'Keep Original Window',
'object': self.keepOriginalWindow
})
self.items.append({
'name': 'spacer',
'string': '------------ Preprocessing Options --------------',
'object': None
})
self.items.append({
'name': 'preProcess',
'string': 'Preprocess Image Stack',
'object': self.preProcess
})
self.items.append({
'name': 'slicesPerVolume',
'string': 'Slices per Volume',
'object': self.framesPerVolume
})
self.items.append({
'name': 'slicesDeletedPerVolume',
'string': 'Frames to Remove per Volume',
'object': self.framesRemoved
})
self.items.append({
'name': 'slicesDeletedPerMovie',
'string': 'Frames to Remove From Start of Stack',
'object': self.framesRemovedStart
})
self.items.append({
'name': 'spacer',
'string': '------------ Overlay Options --------------',
'object': None
})
self.items.append({
'name': 'overlay',
'string': 'Overlay Image in Stack',
'object': self.overlay
})
self.items.append({
'name': 'overlayStart',
'string': '1st Frame of Overlay',
'object': self.overlayStart
})
super().gui()
def gui(self):
self.gui_reset()
#w=g.win
w = self.w
width_units = QtWidgets.QDoubleSpinBox()
width_pixels = QtWidgets.QSpinBox()
width_units.setRange(.001, 1000000)
width_pixels.setRange(1, self.width)
font_size = QtWidgets.QSpinBox()
unit = ComboBox()
unit.addItem('micro')
unit.addItem('nano')
unit.addItem('pixels')
orientation = ComboBox()
orientation.addItem('horizontal')
orientation.addItem('vertical')
color = ComboBox()
color.addItem("White")
color.addItem("Black")
background = ComboBox()
background.addItem('None')
background.addItem('Black')
background.addItem('White')
location = ComboBox()
location.addItem('Lower Right')
location.addItem('Lower Left')
location.addItem('Top Right')
location.addItem('Top Left')
show = CheckBox()
show_label = CheckBox()
if hasattr(
w, 'scaleBarLabel'
) and w.scaleBarLabel is not None: #if the scaleBarLabel already exists
props = w.scaleBarLabel.flika_properties
width_units.setValue(props['width_units'])
width_pixels.setValue(props['width_pixels'])
unit.setCurrentIndex(color.findText(props['unit']))
orientation.setCurrentIndex(color.findText(props['orientation']))
font_size.setValue(props['font_size'])
color.setCurrentIndex(color.findText(props['color']))
background.setCurrentIndex(background.findText(
props['background']))
location.setCurrentIndex(location.findText(props['location']))
else:
font_size.setValue(12)
width_pixels.setValue(int(w.view.width() / 8))
width_units.setValue(1)
show.setChecked(True)
show_label.setChecked(True)
self.items.append({'name': 'unit', 'string': 'Units', 'object': unit})
self.items.append({
'name': 'width_units',
'string': 'Width of bar in [Units]',
'object': width_units
})
self.items.append({
'name': 'width_pixels',
'string': 'Width of bar in pixels',
'object': width_pixels
})
self.items.append({
'name': 'font_size',
'string': 'Font size',
'object': font_size
})
self.items.append({
'name': 'color',
'string': 'Color',
'object': color
})
self.items.append({
'name': 'background',
'string': 'Background',
'object': background
})
self.items.append({
'name': 'location',
'string': 'Location',
'object': location
})
self.items.append({
'name': 'orientation',
'string': 'Orientation',
'object': orientation
})
self.items.append({'name': 'show', 'string': 'Show', 'object': show})
self.items.append({
'name': 'show_label',
'string': 'Show label',
'object': show_label
})
super().gui()
self.preview()