def test_run_info_file_missing(self):
path = os.path.dirname(os.path.abspath(__file__))
with self.assertRaises(OSError):
parsed_run_info = classes.RunInfoParser(
os.path.join(path,
'../test_data/191018_ST-E00214_0031_BH2WY7CCXX/',
'missing_RunInfo.xml'))
def test_run_info_valid_case(self):
path = os.path.dirname(os.path.abspath(__file__))
parsed_run_info = classes.RunInfoParser(
os.path.join(
path,
'../test_data/150424_ST-E00214_0031_BH2WY7CCXX/RunInfo.xml'))
expected_data = {
'Number':
'31',
'FlowcellLayout': {
'TileCount': '24',
'LaneCount': '8',
'SurfaceCount': '2',
'SwathCount': '2'
},
'Instrument':
'ST-E00214',
'Reads': [{
'IsIndexedRead': 'N',
'NumCycles': '151',
'Number': '1'
}, {
'IsIndexedRead': 'Y',
'NumCycles': '8',
'Number': '2'
}, {
'IsIndexedRead': 'N',
'NumCycles': '151',
'Number': '3'
}],
'Flowcell':
'H2WY7CCXX',
'Date':
'150424',
'Id':
'150424_ST-E00214_0031_BH2WY7CCXX'
}
assert parsed_run_info.data == expected_data
assert parsed_run_info.recipe == "2x151"
def test_runinfo():
path = os.path.dirname(os.path.abspath(__file__))
k = classes.RunInfoParser(
os.path.join(
path, '../test_data/150424_ST-E00214_0031_BH2WY7CCXX/RunInfo.xml'))
assert (k.data is not None)