def test_get_gate_from_template(self):
fks = Session(fcs_samples=data1_sample)
fks.add_gate(poly1_gate)
template_gate = fks.get_gate('default', 'Polygon1')
self.assertEqual(template_gate.gate_name, 'Polygon1')
def test_add_poly1_gate():
fks = Session(fcs_samples=data1_sample)
fks.add_gate(poly1_gate)
fks.analyze_samples()
result = fks.get_gating_results('default',
data1_sample.original_filename)
res_path = 'examples/gate_ref/truth/Results_Polygon1.txt'
truth = pd.read_csv(res_path, header=None, squeeze=True,
dtype='bool').values
np.testing.assert_array_equal(truth,
result.get_gate_indices('Polygon1'))
def test_add_matrix_poly4_gate():
fks = Session(fcs_samples=data1_sample)
fks.add_comp_matrix(comp_matrix_01)
dim1 = Dimension('PE', compensation_ref='MySpill')
dim2 = Dimension('PerCP', compensation_ref='MySpill')
dims = [dim1, dim2]
poly_gate = gates.PolygonGate('Polygon4', None, dims, poly1_vertices)
fks.add_gate(poly_gate)
res_path = 'examples/gate_ref/truth/Results_Polygon4.txt'
truth = pd.read_csv(res_path, header=None, squeeze=True,
dtype='bool').values
fks.analyze_samples()
result = fks.get_gating_results('default',
data1_sample.original_filename)
np.testing.assert_array_equal(truth,
result.get_gate_indices('Polygon4'))
def test_add_transform_asinh_range1_gate():
fks = Session(fcs_samples=data1_sample)
fks.add_transform(asinh_xform1)
dim1 = Dimension('FL1-H',
'uncompensated',
'AsinH_10000_4_1',
range_min=0.37,
range_max=0.63)
dims = [dim1]
rect_gate = gates.RectangleGate('ScaleRange1', None, dims)
fks.add_gate(rect_gate)
res_path = 'examples/gate_ref/truth/Results_ScaleRange1.txt'
truth = pd.read_csv(res_path, header=None, squeeze=True,
dtype='bool').values
fks.analyze_samples()
result = fks.get_gating_results('default',
data1_sample.original_filename)
np.testing.assert_array_equal(truth,
result.get_gate_indices('ScaleRange1'))
