def pie_chart_dendrograms(p):
samples_dict = DeserializeFromFile(p.files.samples_serialized_file_path)
debug("Generating piechart dendrograms", p.files.log_file)
ranks = GetCopy(c.ranks[p.type])
if p.type == "rdp":
ranks.remove("domain")
framework.tools.hcluster.generate(
samples_dict,
DeserializeFromFile(p.files.otu_library_file_path),
pie_charts_dir=p.dirs.pie_charts_dir,
dendrogram_prefix=c.pie_chart_dendrogram_file_prefix,
ranks=ranks,
)
def sample_dendrograms(p):
samples_dict = DeserializeFromFile(p.files.sample_map_filtered_samples_dict_file_path)
debug("Generating dendrograms for sample map...", p.files.log_file)
ranks = GetCopy(c.ranks[p.type])
if p.type == "rdp":
ranks.remove("domain")
framework.tools.hcluster.generate(
samples_dict,
DeserializeFromFile(p.files.otu_library_file_path),
pie_charts_dir=p.dirs.pie_charts_dir,
dendrogram_prefix=c.pie_chart_dendrogram_file_prefix,
save_dir=p.dirs.sample_map_dendrograms_dir,
map=helper_functions.get_sample_map_dict(p),
ranks=ranks,
)
