def fstDistance(self, data):
fst = FST()
sampleCount = data.shape[1]
dm = np.zeros((sampleCount, sampleCount))
for i in range(0, sampleCount):
for j in range(0, sampleCount):
#extract the whole copy number profile, so the whole column
sample1Profile = data[:, i]
sample2Profile = data[:, j]
dm[i, j] = fst.computeDistance(sample1Profile, sample2Profile)
return dm
