"--config_list",
action='store',
type=str,
default="")
args = parser.parse_args()
twopDir = args.twop_dir
filename_template = args.filename_template
binSize = args.binSize
output_template = args.output
configList = fncs.getConfigList(args.config_list, twopDir)
configNum = len(configList)
assert configNum % binSize == 0, "Number of configurations " \
+ str( configNum ) + " not evenly divided by bin size " \
+ str( binSize ) + ".\n"
binNum = configNum / binSize
#############################################
# Fill matrices with values from data files #
#############################################
# Get real part of zero-momentum two-point functions
# twop[ c, t ]
threep_template = args.threep_template
mEff_filename = args.mEff_filename
mEff_fitStart = args.mEff_fit_start
mEff_fitEnd = args.mEff_fit_end
tsink = args.t_sink
output_template = args.output_template
# Get configurations from given list or from given threep
# directory if list not given
configList = fncs.getConfigList(args.config_list, threepDir)
configNum = len(configList)
# Set timestep and bin number from effective mass file
timestepNum, binNum = rw.detTimestepAndConfigNum(mEff_filename)
if configNum % binNum != 0:
print "Number of configurations " + str( configNum ) \
+ " not evenly divided by number of bins " + str( binNum ) \
+ " in effective mass file " + mEff_filename + ".\n"
exit()
parser.add_argument("config_list", action='store', type=str)
parser.add_argument("keywords", action='store', nargs=argp.REMAINDER)
args = parser.parse_args()
inputDir = args.input_dir
input_template = args.input_template
outputDir = args.output_dir
output_template = args.output_template
configList = fncs.getConfigList(args.config_list, inputDir)
keywords = args.keywords
configNum = len(configList)
###################################################
# Fill matrices with values from input data files #
###################################################
dataset, datasetName = rw.getHDF5File_wNames(inputDir, configList,
input_template, *keywords)
print "Read data from HDF5 files"
##################################