def setUp(self):
from gPy.Graphs import ADG
asia_adg = ADG()
asia_adg.add_vertices([
'VisitAsia', 'Tuberculosis', 'Smoking', 'Cancer', 'TbOrCa', 'XRay',
'Bronchitis', 'Dyspnea'
])
asia_adg.put_arrows(
(['VisitAsia',
'Tuberculosis'], ['Tuberculosis',
'TbOrCa'], ['Cancer',
'TbOrCa'], ['Smoking', 'Cancer'],
['Smoking',
'Bronchitis'], ['Bronchitis',
'Dyspnea'], ['TbOrCa',
'Dyspnea'], ['TbOrCa', 'XRay']))
self.asia_adg = asia_adg
self.asia_cpts = {
'VisitAsia': (['Visit', 'No_Visit'], [], [((0.01, 0.99), [])]),
'Tuberculosis':
(['Present',
'Absent'], ['VisitAsia'], [((0.05, 0.95), ['Visit']),
((0.01, 0.99), ['No_Visit'])]),
'Smoking': (['Smoker', 'NonSmoker'], [], [((0.5, 0.5), [])]),
'Cancer':
(['Present',
'Absent'], ['Smoking'], [((0.1, 0.9), ['Smoker']),
((0.01, 0.99), ['NonSmoker'])]),
'TbOrCa': (['True', 'False'], ['Tuberculosis', 'Cancer'],
[((1, 0), ['Present', 'Present']),
((1, 0), ['Present', 'Absent']),
((1, 0), ['Absent', 'Present']),
((0, 1), ['Absent', 'Absent'])]),
'XRay': (['Abnormal',
'Normal'], ['TbOrCa'], [((0.98, 0.02), ['True']),
((0.05, 0.95), ['False'])]),
'Bronchitis': (['Present', 'Absent'], ['Smoking'],
[((0.6, 0.4), ['Smoker']),
((0.3, 0.7), ['NonSmoker'])]),
'Dyspnea': (['Present', 'Absent'], ['TbOrCa', 'Bronchitis'],
[((0.9, 0.1), ['True', 'Present']),
((0.7, 0.3), ['True', 'Absent']),
((0.8, 0.2), ['False', 'Present']),
((0.1, 0.9), ['False', 'Absent'])])
}
def setUp(self):
from gPy.Graphs import ADG
asia_adg = ADG()
asia_adg.add_vertices(['VisitAsia', 'Tuberculosis', 'Smoking', 'Cancer',
'TbOrCa', 'XRay', 'Bronchitis', 'Dyspnea'])
asia_adg.put_arrows((['VisitAsia','Tuberculosis'],
['Tuberculosis','TbOrCa'],
['Cancer','TbOrCa'],
['Smoking','Cancer'],
['Smoking','Bronchitis'],
['Bronchitis','Dyspnea'],
['TbOrCa','Dyspnea'],
['TbOrCa','XRay']))
self.asia_adg = asia_adg
self.asia_cpts = {
'VisitAsia': (
['Visit', 'No_Visit'], [],
[
((0.01, 0.99), [])
]),
'Tuberculosis': (
['Present', 'Absent'], ['VisitAsia'],
[
((0.05, 0.95), ['Visit']),
((0.01, 0.99), ['No_Visit'])
]),
'Smoking': (
['Smoker', 'NonSmoker'], [],
[
((0.5, 0.5), [])
]),
'Cancer': (
['Present', 'Absent'], ['Smoking'],
[
((0.1, 0.9), ['Smoker']),
((0.01, 0.99), ['NonSmoker'])
]),
'TbOrCa': (
['True', 'False'], ['Tuberculosis', 'Cancer'],
[
((1, 0), ['Present', 'Present']),
((1, 0), ['Present', 'Absent']),
((1, 0), ['Absent', 'Present']),
((0, 1), ['Absent', 'Absent'])
]),
'XRay': (
['Abnormal', 'Normal'], ['TbOrCa'],
[
((0.98, 0.02), ['True']),
((0.05, 0.95), ['False'])
]),
'Bronchitis': (
['Present', 'Absent'], ['Smoking'],
[
((0.6, 0.4), ['Smoker']),
((0.3, 0.7), ['NonSmoker'])
]),
'Dyspnea': (
['Present', 'Absent'], ['TbOrCa', 'Bronchitis'],
[
((0.9, 0.1), ['True', 'Present']),
((0.7, 0.3), ['True', 'Absent']),
((0.8, 0.2), ['False', 'Present']),
((0.1, 0.9), ['False', 'Absent'])
])
}
