def toProtocolElement(self):
"""
Returns the GA4GH protocol representation of this ReadGroupSet.
"""
readGroupSet = protocol.ReadGroupSet()
readGroupSet.id = self._id
readGroupSet.readGroups = [
readGroup.toProtocolElement() for readGroup in self._readGroups]
readGroupSet.name = None
readGroupSet.datasetId = None
return readGroupSet
def toProtocolElement(self):
"""
Returns the GA4GH protocol representation of this ReadGroupSet.
"""
readGroupSet = protocol.ReadGroupSet()
readGroupSet.id = self.getId()
readGroupSet.readGroups = [
readGroup.toProtocolElement() for readGroup in self._readGroups
]
readGroupSet.name = self.getLocalId()
readGroupSet.datasetId = self.getParentContainer().getId()
return readGroupSet
def toProtocolElement(self):
"""
Returns the GA4GH protocol representation of this ReadGroupSet.
"""
readGroupSet = protocol.ReadGroupSet()
readGroupSet.id = self.getId()
readGroupSet.read_groups.extend(
[readGroup.toProtocolElement()
for readGroup in self.getReadGroups()]
)
readGroupSet.name = self.getLocalId()
readGroupSet.dataset_id = self.getParentContainer().getId()
readGroupSet.stats.CopyFrom(self.getStats())
return readGroupSet
def toProtocolElement(self):
"""
Returns the GA4GH protocol representation of this ReadGroupSet.
"""
readGroupSet = protocol.ReadGroupSet()
readGroupSet.id = self.getId()
readGroupSet.readGroups = [
readGroup.toProtocolElement()
for readGroup in self.getReadGroups()]
readGroupSet.name = self.getLocalId()
readGroupSet.datasetId = self.getParentContainer().getId()
stats = protocol.ReadStats()
stats.alignedReadCount = self.getNumAlignedReads()
stats.unalignedReadCount = self.getNumUnalignedReads()
readGroupSet.stats = stats
return readGroupSet
