def invoke_create():
config = get_config(sys.argv)
if config["database"] == "galaxy":
create_db(config["db_url"], config["config_file"])
elif config["database"] == "tool_shed":
create_tool_shed_db(config["db_url"])
elif config["database"] == "install":
create_install_db(config["db_url"])
def invoke_create():
config = get_config(sys.argv)
if config['database'] == 'galaxy':
create_db(config['db_url'], config['config_file'])
elif config['database'] == 'tool_shed':
create_tool_shed_db(config['db_url'])
elif config['database'] == 'install':
create_install_db(config['db_url'])
def invoke_create():
config = get_config(sys.argv)
if config['database'] == 'galaxy':
create_db(config['db_url'], config['config_file'])
elif config['database'] == 'tool_shed':
create_tool_shed_db(config['db_url'])
elif config['database'] == 'install':
create_install_db(config['db_url'])
from galaxy import eggs
from galaxy.model.migrate.check import create_or_verify_database as create_db
import pkg_resources
from ConfigParser import SafeConfigParser
log = logging.getLogger( __name__ )
# Poor man's optparse
config_file = 'universe_wsgi.ini'
if '-c' in sys.argv:
pos = sys.argv.index( '-c' )
sys.argv.pop(pos)
config_file = sys.argv.pop( pos )
if not os.path.exists( config_file ):
print "Galaxy config file does not exist (hint: use '-c config.ini' for non-standard locations): %s" % config_file
sys.exit( 1 )
cp = SafeConfigParser()
cp.read( config_file )
if cp.has_option( "app:main", "database_connection" ):
db_url = cp.get( "app:main", "database_connection" )
elif cp.has_option( "app:main", "database_file" ):
db_url = "sqlite:///%s?isolation_level=IMMEDIATE" % cp.get( "app:main", "database_file" )
else:
db_url = "sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE"
create_db(db_url, config_file)