def get_toolbox_filters(self, trans, id, payload={}, **kwd):
"""
API call for fetching toolbox filters data. Toolbox filters are specified in galaxy.ini.
The user can activate them and the choice is stored in user_preferences.
"""
user = self._get_user(trans, id)
filter_types = self._get_filter_types(trans)
saved_values = {}
for name, value in user.preferences.items():
if name in filter_types:
saved_values[name] = listify(value, do_strip=True)
inputs = [{
'type':
'hidden',
'name':
'helptext',
'label':
'In this section you may enable or disable Toolbox filters. Please contact your admin to configure filters as necessary.'
}]
errors = {}
factory = FilterFactory(trans.app.toolbox)
for filter_type in filter_types:
self._add_filter_inputs(factory, filter_types, inputs, errors,
filter_type, saved_values)
return {'inputs': inputs, 'errors': errors}
def filter_factory(config_dict=None):
if config_dict is None:
config_dict = dict(
tool_filters=["filtermod:filter_tool"],
tool_section_filters=["filtermod:filter_section"],
tool_label_filters=["filtermod:filter_label_1", "filtermod:filter_label_2"],
)
config = Bunch( **config_dict )
config.toolbox_filter_base_modules = "galaxy.tools.filters,tools.filter_modules"
app = Bunch(config=config)
toolbox = Bunch(app=app)
return FilterFactory(toolbox)
def get_toolbox_filters(self, trans, id, payload={}, **kwd):
"""
API call for fetching toolbox filters data. Toolbox filters are specified in galaxy.ini.
The user can activate them and the choice is stored in user_preferences.
"""
user = self._get_user(trans, id)
filter_types = self._get_filter_types(trans)
saved_values = {}
for name, value in user.preferences.items():
if name in filter_types:
saved_values[name] = listify(value, do_strip=True)
inputs = []
factory = FilterFactory(trans.app.toolbox)
for filter_type in filter_types:
self._add_filter_inputs(factory, filter_types, inputs, filter_type,
saved_values)
return {'message': 'Toolbox filters unchanged.', 'inputs': inputs}
