def __init__(self,
trans,
workflow,
workflow_run_config,
workflow_invocation=None):
self.trans = trans
self.workflow = workflow
if workflow_invocation is None:
invocation_uuid = uuid.uuid1()
workflow_invocation = model.WorkflowInvocation()
workflow_invocation.workflow = self.workflow
# In one way or another, following attributes will become persistent
# so they are available during delayed/revisited workflow scheduling.
workflow_invocation.uuid = invocation_uuid
workflow_invocation.history = workflow_run_config.target_history
self.workflow_invocation = workflow_invocation
else:
self.workflow_invocation = workflow_invocation
self.workflow_invocation.copy_inputs_to_history = workflow_run_config.copy_inputs_to_history
self.workflow_invocation.replacement_dict = workflow_run_config.replacement_dict
module_injector = modules.WorkflowModuleInjector(trans)
self.progress = WorkflowProgress(self.workflow_invocation,
workflow_run_config.inputs,
module_injector)
def __from_step(**kwds):
trans = MockTrans()
step = __step(**kwds)
injector = modules.WorkflowModuleInjector(trans)
injector.inject(step)
module = step.module
module.test_step = step
return module
def __from_step(**kwds):
if "trans" in kwds:
trans = kwds["trans"]
del kwds["trans"]
else:
trans = MockTrans()
step = __step(**kwds)
injector = modules.WorkflowModuleInjector(trans)
injector.inject(step)
module = step.module
module.test_step = step
return module
def __init__(self,
trans,
workflow,
workflow_run_config,
workflow_invocation=None,
progress=None):
self.trans = trans
self.workflow = workflow
if progress is not None:
assert workflow_invocation is None
workflow_invocation = progress.workflow_invocation
if workflow_invocation is None:
invocation_uuid = uuid.uuid1()
workflow_invocation = model.WorkflowInvocation()
workflow_invocation.workflow = self.workflow
# In one way or another, following attributes will become persistent
# so they are available during delayed/revisited workflow scheduling.
workflow_invocation.uuid = invocation_uuid
workflow_invocation.history = workflow_run_config.target_history
self.workflow_invocation = workflow_invocation
else:
self.workflow_invocation = workflow_invocation
self.workflow_invocation.copy_inputs_to_history = workflow_run_config.copy_inputs_to_history
self.workflow_invocation.use_cached_job = workflow_run_config.use_cached_job
self.workflow_invocation.replacement_dict = workflow_run_config.replacement_dict
module_injector = modules.WorkflowModuleInjector(trans)
if progress is None:
progress = WorkflowProgress(
self.workflow_invocation,
workflow_run_config.inputs,
module_injector,
param_map=workflow_run_config.param_map,
jobs_per_scheduling_iteration=getattr(
trans.app.config,
"maximum_workflow_jobs_per_scheduling_iteration", -1),
)
self.progress = progress
