class SimilarityMatrixView(KlustaView):
# Raise the list of highlighted spike absolute indices.
clustersSelected = QtCore.pyqtSignal(np.ndarray)
def initialize(self):
self.set_bindings(SimilarityMatrixBindings)
self.set_companion_classes(
paint_manager=SimilarityMatrixPaintManager,
info_manager=SimilarityMatrixInfoManager,
interaction_manager=SimilarityMatrixInteractionManager,
data_manager=SimilarityMatrixDataManager,
)
def set_data(self, *args, **kwargs):
# if kwargs.get('similarity_matrix', None) is None:
# return
self.data_manager.set_data(*args, **kwargs)
# update?
if self.initialized:
self.paint_manager.update()
self.updateGL()
def clear(self):
self.set_data()
self.paint_manager.set_data(visible=False, visual='clusterinfo')
self.paint_manager.set_data(visible=False, visual='square')
def show_selection(self, clu0, clu1):
self.interaction_manager.show_square(clu0, clu1)
self.interaction_manager.show_cluster(clu0, clu1)
self.updateGL()
class SliceRetriever(QtCore.QObject):
sliceLoaded = QtCore.pyqtSignal(object, object, long)
def __init__(self, parent=None):
super(SliceRetriever, self).__init__(parent)
def load_new_slice(self, trace, slice, xlim, totalduration,
duration_initial):
total_size = trace.shape[0]
samples = trace[slice, :]
# Convert the data into floating points.
samples = np.array(samples, dtype=np.float32)
# Normalize the data.
samples *= (1. / 65535)
# Size of the slice.
nsamples, nchannels = samples.shape
# Create the data array for the plot visual.
M = np.empty((nsamples * nchannels, 2))
samples = samples.T
M[:, 1] = samples.ravel()
# Generate the x coordinates.
x = np.arange(slice.start, slice.stop,
slice.step) / float(total_size - 1)
x = x * 2 * totalduration / duration_initial - 1
M[:, 0] = np.tile(x, nchannels)
bounds = np.arange(nchannels + 1) * nsamples
size = bounds[-1]
self.sliceLoaded.emit(M, bounds, size)
def qCleanupResources():
QtCore.qUnregisterResourceData(0x01, qt_resource_struct, qt_resource_name, qt_resource_data)
def qInitResources():
QtCore.qRegisterResourceData(0x01, qt_resource_struct, qt_resource_name, qt_resource_data)
