def gbd_main(parent_dir, db_env):
config = read_helper_files(parent_dir)
process_version_id = config['process_version_id']
gbd_conn = _GBD_CONN_DEF_MAP[db_env.value]
cache_gbd_db('before', gbd_conn, parent_dir)
logging.info("Create compare_version_id and add to GBD database")
# Retrieve the latest compare version from the gbd database
cv_id = get_latest_compare_version(
gbd_round_id=GBD.GBD_ROUND_ID,
conn_def=gbd_conn)
# Instantiate the CompareVersion object
current_cv = CompareVersion(compare_version_id=cv_id, env=db_env)
# Get a list of process versions in the current CompareVersion
# Exclude gbd_process_id 3 - CoDCorrect (we're adding a new one)
# and gbd_process_id 14 - SEVs, not included in compare version string.
process_versions = [pv for pv in current_cv.gbd_process_versions
if pv.gbd_process_id not in [3, 14]]
# Create a tuple of gbd_process_version_id to gbd_process_version_note
pv_id_note_tuple = [(pv.gbd_process_id, pv.gbd_process_version_note)
for pv in process_versions]
# Format the respective descriptions used to create the new
# compare version.
cv_strs = [get_process_desc_from_id(pv_id, note) for pv_id, note
in pv_id_note_tuple]
codcorrect_desc = 'CoDCorrect: {}'.format(output_version_id)
# Additional formatting to match pattern in database
cv_strs += [codcorrect_desc]
cv_strs = sorted(cv_strs)
cv_desc = ', '.join(cv_strs)
# Create new compare version
new_cv = CompareVersion.add_new_version(
gbd_round_id=GBD.GBD_ROUND_ID,
compare_version_description=cv_desc,
env=db_env)
# Create list of process_version_ids
pvids = [pv.gbd_process_version_id for pv in process_versions]
pvids += [process_version_id]
# Add gbd_process_version_ids to compare version
new_cv.add_process_version(pvids)
logging.info("Activating new process version")
activate_new_process_version(process_version_id,
gbd_conn)
activate_new_compare_version(new_cv.compare_version_id, gbd_conn)
cache_gbd_db('after', gbd_conn, parent_dir)
logging.info("Cache saved to _temp. keys: 'process_version_before/after' "
"and 'compare_version_before/after'")
logging.info("GBD Post Scriptum Finished.")
def _create_compare_version(self):
"""Should record all process_versions created in the run, plus the
CodCorrect and COMO process versions used as inputs"""
description = self._generate_description()
cv = CompareVersion.add_new_version(
gbd_round_id=self.gbd_round_id,
compare_version_description=description,
env=self.upload_env)
# Get this list of input process versions, including the burdenator
# proc version
process_versions = (list(self.input_process_versions.values()) +
list(self.output_process_versions.values()))
cv.add_process_version(process_versions)
self.compare_version_id = cv.compare_version_id
return cv.compare_version_id
def create_compare_version(self, process_version_id):
cv = CompareVersion.get_best(gbd_round_id=self.gbd_round_id,
decomp_step=self.decomp_step)
if not cv:
cv = CompareVersion.add_new_version(self.gbd_round_id,
self.decomp_step,
'MMR: ' + process_version_id)
cv.add_process_version(process_version_id)
bleeding_edge_df = bleeding_edge(cv.compare_version_id)
# Add bleeding edge processes if they aren't MMR
for idx in bleeding_edge_df.index.tolist():
if (bleeding_edge_df.loc[idx, 'gbd_process_id'] !=
mmr_constants.MMR_GBD_PROCESS_ID):
cv.add_process_version(
bleeding_edge_df.loc[idx, 'gbd_process_version_id'])