def _chunk_query_dss_objs_from_dss_uids(self):
list_of_data_set_samples_of_analysis = []
for uid_list in general.chunks(
self.virtual_obj_manager.list_of_data_set_sample_uids):
list_of_data_set_samples_of_analysis.extend(
list(DataSetSample.objects.filter(id__in=uid_list)))
return list_of_data_set_samples_of_analysis
def _chunk_query_dss_from_dss_uids(self):
print('Chunking query')
data_set_samples = []
for uid_list in general.chunks(self.list_of_data_set_sample_uids):
data_set_samples.extend(
list(DataSetSample.objects.filter(id__in=uid_list)))
return data_set_samples
def _chunk_query_dss_from_ds_uids(self):
data_set_samples = []
for uid_list in general.chunks(self.list_of_data_set_uids):
data_set_samples.extend(
list(
DataSetSample.objects.filter(
data_submission_from__in=uid_list)))
return data_set_samples
def _chunk_query_dsss_from_cc_objs(self, ccs_of_analysis):
data_set_sample_sequence_objects_of_analysis = []
for uid_list in general.chunks(ccs_of_analysis):
data_set_sample_sequence_objects_of_analysis.extend(
list(
DataSetSampleSequence.objects.filter(
clade_collection_found_in__in=uid_list)))
return data_set_sample_sequence_objects_of_analysis
def _chunk_query_dss_objs_from_ds_uids(self, ds_of_analysis):
dss_of_analysis = []
for uid_list in general.chunks(ds_of_analysis):
dss_of_analysis.extend(
list(
DataSetSample.objects.filter(
data_submission_from__in=uid_list)))
return dss_of_analysis
def _set_ccs_of_analysis(self, data_set_samples):
print('Chunking query')
clade_collection_obj_list = []
for uid_list in general.chunks(data_set_samples):
clade_collection_obj_list.extend(
list(
CladeCollection.objects.filter(
data_set_sample_from__in=uid_list)))
return clade_collection_obj_list
def get_clade_collections(self):
uids_for_query = [
int(x) for x in self.list_of_clade_collections.split(',')
]
cc_objs_list = []
for uid_list in general.chunks(uids_for_query):
cc_objs_list.extend(
list(CladeCollection.objects.filter(id__in=uid_list)))
return cc_objs_list
def get_clade_collections(self):
list_of_uids = [int(x) for x in self.list_of_data_set_uids.split(',')]
clade_collections = []
for uid_list in general.chunks(list_of_uids):
clade_collections.extend(
list(
CladeCollection.objects.filter(
data_set_sample_from__data_submission_from__in=uid_list
)))
return clade_collections
def _chunk_query_ref_seq_obj_from_rs_uids(self, rs_uid_list_to_query):
ref_seq_objs = []
for uid_list in general.chunks(rs_uid_list_to_query):
ref_seq_objs.extend(
list(ReferenceSequence.objects.filter(id__in=uid_list)))
return ref_seq_objs
def _chunk_query_ds_objs_from_ds_uids(self, ds_uid_list_for_query):
ds_of_analysis = []
for uid_list in general.chunks(ds_uid_list_for_query):
ds_of_analysis.extend(list(
DataSet.objects.filter(id__in=uid_list)))
return ds_of_analysis