def __init__(self, parent, title, fileName=None):
# Initialize frame
wx.Frame.__init__(self,
parent,
title='complex BIO gui in development',
size=(1125, 600))
self.VarInit()
self.tools = gpi.GetPlugIns(self.hD + r"\Plugins\Tools")
self.views = gpi.GetPlugIns(self.hD + r"\Plugins\Views")
self.GetColors()
self.SetBackgroundColour(self.colorList['Main']['Back'])
mts = mtbs.MenuToolBarSetup(self, self.tools, self.hD)
self.toolIDs = mts.GetIDs()
mts.DoMenubar("", "", False, False, False, True)
mts.DoToolbar()
self.SetButtons()
self.SetViewWindows()
self.SetMainPanels()
self.SetViewTypes()
self.listView = lv.ListView()
self.listView.Init(self, self.top, self.hD, self.colorList)
self.curView = self.views[self.viewTypes['Amino Acids'][0]].Plugin()
self.curView.Init(self, self.bottom, self.colorList)
self.OnSelect(wx.EVT_IDLE)
self.Bind(wx.EVT_SIZE, self.OnSize)
self.Bind(wx.EVT_CLOSE,
self.DoExit) # Prompt user before closing frame
"""Leave untouched until ready
def TabButtonInit(self):
self.views = gpi.GetPlugIns(r".\plugins\Views\PDBViewPlugins")
xPos = 10
yPos = 130
for i, v in enumerate(self.views.values()):
if xPos > 150:
xPos = 10
yPos += 22
viewName = v.GetName()
self.tabButtons.append(
wx.Button(self.frame,
-1,
str(viewName),
pos=(xPos, yPos),
size=(60, 22),
style=wx.NO_BORDER))
self.tabButtons[i].SetBackgroundColour(
self.cL['ViewPanelGrayFrame']['Back'])
self.tabButtons[i].SetForegroundColour(
self.cL['ViewPanelGrayFrame']['Fore'])
xPos += 60
self.frame.Bind(wx.EVT_BUTTON, self.OnButton, self.tabButtons[i])
self.curView = self.views.values()[0].Plugin()
self.lastButton = self.tabButtons[0]
self.buttonLabel = self.tabButtons[0].GetLabelText()
def GetPlugins(self):
# Method to identify BLAST plugins
dirt = self.hD + r"\plugins\tools\ALIGNPlugins"
self.plugins = gpi.GetPlugIns(dirt)
self.curPlugin = self.plugins[self.name].Plugin()
self.curPlugin.Init(self)
self.curPlugin.Clear()
def TabButtonInit(self):
self.views = gpi.GetPlugIns(r".\plugins\Views\GEViewPlugins")
self.tabButtons = []
self.selPos = -1
yPos = 10
xPos = 10
for i,v in enumerate(self.views.values()):
viewName = v.GetName()
if viewName == 'Selection':
self.selPos = i
v = v.Plugin()
self.tabButtons.append(wx.Button(
self.grayFrame, -1, str(viewName), pos = (xPos, yPos),
size = (62, 22), style = wx.NO_BORDER))
self.tabButtons[i].SetBackgroundColour(
self.colorList['ViewPanelGrayFrame']['Back'])
self.tabButtons[i].SetForegroundColour(
self.colorList['ViewPanelGrayFrame']['Fore'])
self.curView = v
self.grayFrame.Bind(wx.EVT_BUTTON, self.DoButtonClicked,
self.tabButtons[i])
if xPos < 120:
xPos += 60
else:
xPos = 10
yPos += 22
self.lastButton = self.tabButtons[0]
def TabButtonInit(self):
# Create buttons for plug-ins
self.views = gpi.GetPlugIns(r".\plugins\Views\SSEViewPlugins")
self.tabButtons = []
self.selPos = -1
yPos = 10
xPos = 10
for i, v in enumerate(self.views.values()):
viewName = v.GetName()
v = v.Plugin()
self.tabButtons.append(
wx.Button(self.frame,
-1,
str(viewName),
pos=(xPos, yPos),
size=(62, 22),
style=wx.NO_BORDER))
self.tabButtons[i].SetBackgroundColour(
self.colorList['ViewPanelGrayFrame']['Back'])
self.tabButtons[i].SetForegroundColour(
self.colorList['ViewPanelGrayFrame']['Fore'])
self.curView = v
self.frame.Bind(wx.EVT_BUTTON, self.DoView, self.tabButtons[i])
xPos += 62
self.lastButton = self.tabButtons[0]
def GetPlugins(self):
#Method to identify 3D visualization plugins
self.pList = gpi.GetPlugIns(self.hD + r"\plugins\Tools\3DViewPlugins")
for i, p in enumerate(self.pList):
if str(self.pList[p].GetName())[-1] == '^':
self.dTools.append(self.pList[p])
if str(self.pList[p].GetName())[:-1] == r"Ribbon":
self.activeDraw = self.dTools[-1]
else:
self.pTools[p] = self.pList[p]
def SetButtons(self):
self.views = gpi.GetPlugIns(self.hd +
r"\plugins\Views\BLASTViewPlugins")
xPos = 300
self.buttons = []
for v in self.views.values():
self.buttons.append(
wx.Button(self.bigPanel,
-1,
str(v.GetName()),
pos=(self.bPSize[0] * xPos / 747,
self.bPSize[1] - 35),
size=(90, 22),
style=wx.NO_BORDER))
self.buttons[-1].SetBackgroundColour(
self.colorList[v.GetColors()]['Back'])
self.buttons[-1].SetForegroundColour(
self.colorList[v.GetColors()]['Fore'])
xPos += 100
self.bigPanel.Bind(wx.EVT_BUTTON, self.DoView, self.buttons[-1])
def TabButtonInit(self):
self.views = gpi.GetPlugIns(r".\plugins\Views\AAViewPlugins")
xPos = 10
self.tabButtons = []
for v in self.views.values():
self.tabButtons.append(
wx.Button(self.frame,
-1,
str(v.GetName()),
pos=(xPos, 0),
size=(60, 22),
style=wx.NO_BORDER))
self.tabButtons[-1].SetBackgroundColour(
self.colorList['ViewPanelGrayFrame']['Back'])
self.tabButtons[-1].SetForegroundColour(
self.colorList['ViewPanelGrayFrame']['Fore'])
xPos += 60
self.curView = v
self.frame.Bind(wx.EVT_BUTTON, self.DoView, self.tabButtons[-1])
self.lastButton = self.tabButtons[2]
def TabButtonInit(self):
self.views = gpi.GetPlugIns(r".\plugins\Views\NAViewPlugins")
newFont = wx.Font(7, wx.FONTFAMILY_MODERN, wx.FONTSTYLE_NORMAL,
wx.FONTWEIGHT_NORMAL)
self.tabButtons = []
yPos = 20
for i, v in enumerate(self.views.values()):
viewName = v.GetName()
v = v.Plugin()
self.tabButtons.append(
wx.Button(self.grayFrame,
-1,
str(viewName),
pos=(1, yPos),
size=(63, 22),
style=wx.NO_BORDER))
self.tabButtons[i].SetBackgroundColour(v.GetBackColor())
self.tabButtons[i].SetForegroundColour(v.GetForeColor())
self.tabButtons[i].SetFont(newFont)
self.curView = v
self.grayFrame.Bind(wx.EVT_BUTTON, self.DoButtonClicked,
self.tabButtons[i])
yPos += 40
def TabButtonInit(self):
self.views = gpi.GetPlugIns(r".\plugins\Views\AlignViewPlugins")
yPos = 10
xPos = 5
self.tabButtons = []
for i, v in enumerate(self.views.values()):
self.tabButtons.append(
wx.Button(self.frame,
-1,
str(v.GetName()),
pos=(xPos, yPos),
size=(50, 25),
style=wx.NO_BORDER))
self.tabButtons[-1].SetBackgroundColour(
self.colorList['ViewPanelGrayFrame']['Back'])
self.tabButtons[-1].SetForegroundColour(
self.colorList['ViewPanelGrayFrame']['Fore'])
xPos += 50
if (i + 1) % 3 == 0:
yPos += 35
xPos = 5
self.curView = v.Plugin()
self.frame.Bind(wx.EVT_BUTTON, self.DoView, self.tabButtons[-1])
def GetPlugins(self):
# Method to identify BLAST plugins
dirt = self.hD + r"\plugins\Tools\SSPredPlugins"
self.plugins = gpi.GetPlugIns(dirt)
self.curPlugin = self.plugins[self.name].Plugin()
def GetPlugins(self):
# Method to identify BLAST plugins
dirt = self.hD+r"\plugins\tools\GOPlugins"
self.plugins = gpi.GetPlugIns(dirt)
def GetPlugins(self):
# Method to identify BLAST plugins
dirt = self.hD+r"\plugins\tools\BLASTPlugins"
self.plugins = gpi.GetPlugIns(dirt)
# Obtain list of available databases
self.blastDbs = __import__("BlastDataBases")