def convert_to_gillespy_model(path):
if os.path.exists(path):
try:
gpy_model, errors = convert(path)
return gpy_model, errors
except:
return None, []
else:
raise StochSSFileNotFoundError("Could not find the sbml file: " + path,
None)
def import_SBML(filename, name=None, gillespy_model=None):
"""
SBML to GillesPy model converter. NOTE: non-mass-action rates
in terms of concentrations may not be converted for population
simulation. Use caution when importing SBML.
Attributes
----------
filename : str
Path to the SBML file for conversion.
name : str
Name of the resulting model.
gillespy_model : gillespy.Model
If desired, the SBML model may be added to an existing GillesPy model.
"""
try:
from gillespy2.sbml.SBMLimport import convert
except ImportError:
raise ImportError('SBML conversion not imported successfully')
return convert(filename, model_name=name, gillespy_model=gillespy_model)
