def display(self, frame, width, height, reverse=False):
"""
NOTE: this is called from the IISRequestHandler
"""
fb = self.get_frame(frame)
self.current_frame = frame
if reverse:
fb.buffer.reverse()
# frames are indexed from 1 in IRAF
chname = fb.chname
if chname == None:
chname = 'Frame%d' % (frame+1)
fb.chname = chname
self.logger.debug("display to %s" %(chname))
try:
data = fb.buffer
byteswap = False
dims = (fb.height, fb.width)
dtype = numpy.uint8
metadata = {}
image = IRAF_AstroImage(logger=self.logger)
#image.load_buffer(fb.buffer, dims, dtype, byteswap=byteswap,
# metadata=metadata)
data = numpy.fromstring(fb.buffer, dtype=dtype)
data = data.reshape(dims)
# Image comes in from IRAF flipped for screen display
data = numpy.flipud(data)
image.set_data(data, metadata=metadata)
# Save coordinate transform info
image.set(ct=fb.ct)
# make up a name (is there a protocol slot for the name?)
fitsname = str(time.time())
# extract path from ref
oldref = fb.ct.ref
items = oldref.split('!')
host = items[0]
path = '!'.join(items[1:])
image.set(name=fitsname, path=path, host=host)
#image.update_keywords(header)
except Exception as e:
# Some kind of error unpacking the data
errmsg = "Error creating image data for '%s': %s" % (
chname, str(e))
self.logger.error(errmsg)
raise GingaPlugin.PluginError(errmsg)
# Do the GUI bits as the GUI thread
self.fv.gui_do(self._gui_display_image, fitsname, image, chname)
def build_gui(self, container):
if not have_samp:
raise GingaPlugin.PluginError(
"To run this plugin you need to install the astropy.vo.samp module"
)
vbox = Widgets.VBox()
vbox.set_border_width(4)
vbox.set_spacing(2)
msgFont = self.fv.getFont("sansFont", 12)
tw = Widgets.TextArea(wrap=True, editable=False)
tw.set_font(msgFont)
self.tw = tw
fr = Widgets.Frame("Instructions")
fr.set_widget(tw)
vbox.add_widget(fr, stretch=0)
fr = Widgets.Frame("SAMP")
captions = [
('Start hub', 'checkbutton'),
('Connect client', 'checkbutton'),
]
w, b = Widgets.build_info(captions)
self.w.update(b)
b.start_hub.set_tooltip("Start a SAMP hub")
b.start_hub.set_state(self.settings.get('start_hub', True))
b.start_hub.add_callback('activated', self.start_hub_cb)
b.connect_client.set_tooltip("Register with a SAMP hub")
b.connect_client.set_state(self.settings.get('default_connect', True))
b.connect_client.add_callback('activated', self.connect_client_cb)
fr.set_widget(w)
vbox.add_widget(fr, stretch=0)
# stretch
vbox.add_widget(Widgets.Label(''), stretch=1)
btns = Widgets.HBox()
btns.set_border_width(4)
btns.set_spacing(4)
btn = Widgets.Button("Close")
btn.add_callback('activated', lambda w: self.close())
btns.add_widget(btn)
btns.add_widget(Widgets.Label(''), stretch=1)
vbox.add_widget(btns, stretch=0)
container.add_widget(vbox, stretch=1)
def build_gui(self, container):
if not have_samp:
raise GingaPlugin.PluginError(
"To run this plugin you need to install the "
"astropy package")
vbox = Widgets.VBox()
vbox.set_border_width(4)
vbox.set_spacing(2)
fr = Widgets.Frame("SAMP")
captions = [
('Start hub', 'checkbutton'),
('Connect client', 'checkbutton'),
]
w, b = Widgets.build_info(captions)
self.w.update(b)
b.start_hub.set_tooltip("Start a SAMP hub")
b.start_hub.set_state(self.settings.get('start_hub', True))
b.start_hub.add_callback('activated', self.start_hub_cb)
b.connect_client.set_tooltip("Register with a SAMP hub")
b.connect_client.set_state(self.settings.get('default_connect', True))
b.connect_client.add_callback('activated', self.connect_client_cb)
fr.set_widget(w)
vbox.add_widget(fr, stretch=0)
# stretch
vbox.add_widget(Widgets.Label(''), stretch=1)
btns = Widgets.HBox()
btns.set_border_width(4)
btns.set_spacing(4)
btn = Widgets.Button("Close")
btn.add_callback('activated', lambda w: self.close())
btns.add_widget(btn)
btn = Widgets.Button("Help")
btn.add_callback('activated', lambda w: self.help())
btns.add_widget(btn, stretch=0)
btns.add_widget(Widgets.Label(''), stretch=1)
vbox.add_widget(btns, stretch=0)
container.add_widget(vbox, stretch=1)
self.gui_up = True
def load_fits_buffer(self, imname, chname, file_buf, num_hdu, metadata):
from astropy.io import fits
# Unpack the data
try:
# Decode binary data
file_buf = binascii.a2b_base64(file_buf)
# Uncompress data if necessary
decompress = metadata.get('decompress', None)
if decompress == 'bz2':
file_buf = bz2.decompress(file_buf)
self.logger.info("received data: len=%d num_hdu=%d" %
(len(file_buf), num_hdu))
in_f = BytesIO(file_buf)
# Create image container
with fits.open(in_f, 'readonly') as fits_f:
image = AstroImage.AstroImage(metadata=metadata,
logger=self.logger)
image.load_hdu(fits_f[num_hdu], fobj=fits_f)
image.set(name=imname, path=None, idx=num_hdu)
except Exception as e:
# Some kind of error unpacking the data
errmsg = "Error creating image data for '%s': %s" % (imname,
str(e))
self.logger.error(errmsg)
raise GingaPlugin.PluginError(errmsg)
# Display the image
channel = self.fv.gui_call(self.fv.get_channel_on_demand, chname)
# Note: this little hack needed to let window resize in time for
# file to auto-size properly
self.fv.gui_do(self.fv.change_channel, channel.name)
self.fv.gui_do(self.fv.add_image, imname, image, chname=channel.name)
return 0
def display_fitsbuf(self, fitsname, chname, data, dims, dtype,
header, metadata, compressed):
"""Display a FITS image buffer. Parameters:
_fitsname_: name of the file
_chname_: channel to display the data
_data_: ascii encoded numpy containing image data
_dims_: image dimensions in pixels (usually a (height, width) tuple)
_dtype_: numpy data type of encoding (e.g. 'float32')
_header_: fits file header as a dictionary
_metadata_: metadata about image to attach to image
_compressed_: True if the data is compressed
"""
# Unpack the data
try:
# Decode binary data
data = binascii.a2b_base64(data)
# Uncompress data if necessary
if compressed:
data = bz2.decompress(data)
if dtype == '':
dtype = numpy.float32
else:
# string to actual type
dtype = getattr(numpy, dtype)
# Create image container
image = AstroImage.AstroImage()
image.load_buffer(data, dims, dtype, byteswap=byteswap,
metadata=metadata)
image.set(name=fitsname)
image.update_keywords(header)
except Exception, e:
# Some kind of error unpacking the data
errmsg = "Error creating image data for '%s': %s" % (
fitsname, str(e))
self.logger.error(errmsg)
raise GingaPlugin.PluginError(errmsg)
def load_fits_buffer(self, imname, chname, file_buf, num_hdu,
metadata):
from astropy.io import fits
# Unpack the data
try:
# Decode binary data
file_buf = binascii.a2b_base64(file_buf)
# Uncompress data if necessary
decompress = metadata.get('decompress', None)
if decompress == 'bz2':
file_buf = bz2.decompress(file_buf)
self.logger.info("received data: len=%d num_hdu=%d" % (
len(file_buf), num_hdu))
in_f = BytesIO(file_buf)
# Create image container
with fits.open(in_f, 'readonly') as fits_f:
image = AstroImage.AstroImage(metadata=metadata,
logger=self.logger)
image.load_hdu(fits_f[num_hdu], fobj=fits_f)
image.set(name=imname)
except Exception as e:
# Some kind of error unpacking the data
errmsg = "Error creating image data for '%s': %s" % (
imname, str(e))
self.logger.error(errmsg)
raise GingaPlugin.PluginError(errmsg)
# Enqueue image to display datasrc
self.fv.gui_do(self.fv.add_image, imname, image,
chname=chname)
return 0
def load_buffer(self, imname, chname, img_buf, dims, dtype, header,
metadata, compressed):
"""Display a FITS image buffer.
Parameters
----------
`imname`: string
a name to use for the image in Ginga
`chname`: string
channel in which to load the image
`img_buf`: string
the image data, encoded as a base64 ascii encoded string
`dims`: tuple
image dimensions in pixels (usually (height, width))
`dtype`: string
numpy data type of encoding (e.g. 'float32')
`header`: dict
fits file header as a dictionary
`metadata`: dict
other metadata about image to attach to image
`compressed`: bool
decompress buffer using "bz2"
Returns
-------
0
Notes
-----
* Get array dims: data.shape
* Get array dtype: str(data.dtype)
* Make a string from a numpy array: buf = data.tostring()
* Compress the buffer: buf = bz2.compress(buf)
* Convert buffer to ascii-encoding: buf = binascii.b2a_base64(buf)
"""
self.logger.info("received image data len=%d" % (len(img_buf)))
# Unpack the data
try:
# Decode binary data
img_buf = binascii.a2b_base64(img_buf)
# Uncompress data if necessary
decompress = metadata.get('decompress', None)
if compressed or (decompress == 'bz2'):
img_buf = bz2.decompress(img_buf)
# dtype string works for most instances
if dtype == '':
dtype = numpy.float32
byteswap = metadata.get('byteswap', False)
# Create image container
image = AstroImage.AstroImage(logger=self.logger)
image.load_buffer(img_buf,
dims,
dtype,
byteswap=byteswap,
metadata=metadata)
image.update_keywords(header)
image.set(name=imname, path=None)
except Exception as e:
# Some kind of error unpacking the data
errmsg = "Error creating image data for '%s': %s" % (imname,
str(e))
self.logger.error(errmsg)
raise GingaPlugin.PluginError(errmsg)
# Display the image
channel = self.fv.gui_call(self.fv.get_channel_on_demand, chname)
# Note: this little hack needed to let window resize in time for
# file to auto-size properly
self.fv.gui_do(self.fv.change_channel, channel.name)
self.fv.gui_do(self.fv.add_image, imname, image, chname=channel.name)
return 0
def load_buffer(self, imname, chname, img_buf, dims, dtype, header,
wav_buf, wav_dtype, metadata):
"""
Load and display the 2D slit image.
Parameters
----------
imname : :obj:`str`
Name to use for the image in Ginga
chname : :obj:`str`
Channel in which to load the image
img_buf : bytes
Image data, as a buffer
dims : :obj:`tuple`
Image dimensions in pixels, typically (height, width)
dtype : :obj:`str`
numpy data type of encoding (e.g. 'float32')
header : :obj:`dict`
Fits file header as a dictionary
wav_buf : bytes
Wavelength image data, as a buffer. Ultimate 2D shape
once parsed must match the input image data.
wav_dtype : :obj:`str`
numpy data type of wav_buf array encoding (e.g. 'float32')
metadata : :obj:`dict`
other metadata about image to attach to image
Returns
-------
status : :obj:`int`
Load status number. Currently always returns 0.
Notes
-----
* Get array dims: data.shape
* Get array dtype: str(data.dtype)
* Make a string from a numpy array: buf = grc.Blob(data.tobytes())
"""
self.logger.info("received image data len=%d" % (len(img_buf)))
# Unpack the data
# TODO: Should trim down what's in this try/except block
try:
# dtype string works for most instances
if dtype == '':
dtype = np.float
byteswap = metadata.get('byteswap', False)
# unpack the auxillary wavelength file
data = np.fromstring(wav_buf, dtype=wav_dtype)
if byteswap:
data.byteswap(True)
wav_np = data.reshape(dims)
# Create image container
image = SlitImage(wav_np=wav_np, logger=self.logger)
image.load_buffer(img_buf,
dims,
dtype,
byteswap=byteswap,
metadata=metadata)
image.update_keywords(header)
image.set(name=imname, path=None)
except Exception as e:
# Some kind of error unpacking the data
errmsg = 'Error creating image data for {0}: {1}'.format(imname, e)
self.logger.error(errmsg)
raise GingaPlugin.PluginError(errmsg)
# Display the image
channel = self.fv.gui_call(self.fv.get_channel_on_demand, chname)
# Note: this little hack needed to let window resize in time for
# file to auto-size properly
self.fv.gui_do(self.fv.change_channel, channel.name)
self.fv.gui_do(self.fv.add_image, imname, image, chname=channel.name)
return 0
def load_buffer(self, imname, chname, data, dims, dtype, header, metadata,
compressed):
"""Display a FITS image buffer.
Parameters
----------
`imname`: string
a name to use for the image in Ginga
`chname`: string
channel in which to load the image
`data`: string
the image data, encoded as a base64 ascii encoded string
`dims`: tuple
image dimensions in pixels (usually (height, width))
`dtype`: string
numpy data type of encoding (e.g. 'float32')
`header`: dict
fits file header as a dictionary
`metadata`: dict
other metadata about image to attach to image
`compressed`: boolean
True if `data` is bz2 compressed before ascii encoding
Returns
-------
0
Notes
-----
* Get array dims: data.shape
* Get array dtype: str(data.dtype)
* Make a string from a numpy array: buf = data.tostring()
* Compress the buffer: buf = bz2.compress(buf)
* Convert buffer to ascii-encoding: buf = binascii.b2a_base64(buf)
"""
# Unpack the data
try:
# Decode binary data
data = binascii.a2b_base64(data)
# Uncompress data if necessary
if compressed:
data = bz2.decompress(data)
if dtype == '':
dtype = numpy.float32
else:
# string to actual type
dtype = getattr(numpy, dtype)
# Create image container
image = AstroImage.AstroImage(logger=self.logger)
image.load_buffer(data,
dims,
dtype,
byteswap=byteswap,
metadata=metadata)
image.set(name=imname)
image.update_keywords(header)
except Exception as e:
# Some kind of error unpacking the data
errmsg = "Error creating image data for '%s': %s" % (fitsname,
str(e))
self.logger.error(errmsg)
raise GingaPlugin.PluginError(errmsg)
# Enqueue image to display datasrc
self.fv.gui_do(self.fv.add_image, fitsname, image, chname=chname)
return 0
