def testGetElementsByCentroids(self, admin):
publicFolder = utilities.namedFolder(admin, 'Public')
item = Item().createItem('sample', admin, publicFolder)
largeSample = makeLargeSampleAnnotation()
# Use a copy of largeSample so we don't just have a reference to it
annot = Annotation().createAnnotation(item, admin, largeSample.copy())
# Clear existing element data, the get elements
annot.pop('elements', None)
annot.pop('_elementQuery', None)
Annotationelement().getElements(annot, {'centroids': True})
assert '_elementQuery' in annot
assert len(annot['annotation']['elements']) == len(largeSample['elements']) # 7707
assert annot['_elementQuery']['centroids'] is True
assert 'props' in annot['_elementQuery']
elements = annot['annotation']['elements']
assert isinstance(elements[0], list)
def testVersionList(self, db, user, admin):
privateFolder = utilities.namedFolder(admin, 'Private')
# Test without history
Setting().set(constants.PluginSettings.LARGE_IMAGE_ANNOTATION_HISTORY, False)
item = Item().createItem('sample', admin, privateFolder)
annot = Annotation().createAnnotation(item, admin, copy.deepcopy(sampleAnnotation))
annot['annotation']['name'] = 'First Change'
annot = Annotation().save(annot)
annot['annotation']['name'] = 'Second Change'
annot = Annotation().save(annot)
assert len(list(Annotation().versionList(annot['_id'], user=admin))) == 1
assert len(list(Annotation().versionList(str(annot['_id']), user=admin))) == 1
assert len(list(Annotation().versionList(str(annot['_id']), force=True))) == 1
assert len(list(Annotation().versionList(annot['_id'], user=user))) == 0
# Test with history
Setting().set(constants.PluginSettings.LARGE_IMAGE_ANNOTATION_HISTORY, True)
annot = Annotation().createAnnotation(item, admin, copy.deepcopy(sampleAnnotation))
annot['annotation']['name'] = 'First Change'
annot = Annotation().save(annot)
# simulate a concurrent save
dup = Annotation().findOne({'_id': annot['_id']})
dup['_annotationId'] = dup.pop('_id')
dup['_active'] = False
Annotation().collection.insert_one(dup)
# Save again
annot['annotation']['name'] = 'Second Change'
annot = Annotation().save(annot)
assert len(list(Annotation().versionList(annot['_id'], user=admin))) == 3
assert len(list(Annotation().versionList(annot['_id'], user=user))) == 0
assert len(list(Annotation().versionList(annot['_id'], user=admin, offset=1))) == 2
assert len(list(Annotation().versionList(annot['_id'], user=admin, offset=1, limit=1))) == 1
def testAnnotationHistoryEndpoints(self, server, user, admin):
privateFolder = utilities.namedFolder(admin, 'Private')
Setting().set(constants.PluginSettings.LARGE_IMAGE_ANNOTATION_HISTORY,
True)
item = Item().createItem('sample', admin, privateFolder)
# Create an annotation with some history
annot = Annotation().createAnnotation(item, admin,
copy.deepcopy(sampleAnnotation))
annot['annotation']['name'] = 'First Change'
annot['annotation']['elements'].extend([
{
'type': 'point',
'center': [20.0, 25.0, 0]
},
{
'type': 'point',
'center': [10.0, 24.0, 0]
},
{
'type': 'point',
'center': [25.5, 23.0, 0]
},
])
annot = Annotation().save(annot)
# simulate a concurrent save
dup = Annotation().findOne({'_id': annot['_id']})
dup['_annotationId'] = dup.pop('_id')
dup['_active'] = False
Annotation().collection.insert_one(dup)
# Save again
annot['annotation']['name'] = 'Second Change'
annot['annotation']['elements'].pop(2)
annot = Annotation().save(annot)
# Test the list of versions
resp = server.request('/annotation/%s/history' % annot['_id'],
user=user)
assert utilities.respStatus(resp) == 200
assert resp.json == []
resp = server.request('/annotation/%s/history' % annot['_id'],
user=admin)
assert utilities.respStatus(resp) == 200
assert len(resp.json) == 3
versions = resp.json
# Test getting a specific version
resp = server.request('/annotation/%s/history/%s' %
(annot['_id'], versions[1]['_version']),
user=user)
assert utilities.respStatus(resp) == 403
resp = server.request('/annotation/%s/history/%s' %
(annot['_id'], versions[1]['_version']),
user=admin)
assert utilities.respStatus(resp) == 200
assert resp.json['_annotationId'] == str(annot['_id'])
assert len(resp.json['annotation']['elements']) == 4
resp = server.request('/annotation/%s/history/%s' %
(annot['_id'], versions[0]['_version'] + 1),
user=admin)
assert utilities.respStatus(resp) == 400
# Test revert
resp = server.request('/annotation/%s/history/revert' % (annot['_id']),
method='PUT',
user=user)
assert utilities.respStatus(resp) == 403
resp = server.request('/annotation/%s/history/revert' % (annot['_id']),
method='PUT',
user=admin,
params={'version': versions[0]['_version'] + 1})
assert utilities.respStatus(resp) == 400
resp = server.request('/annotation/%s/history/revert' % (annot['_id']),
method='PUT',
user=admin,
params={'version': versions[1]['_version']})
assert utilities.respStatus(resp) == 200
loaded = Annotation().load(annot['_id'], user=admin)
assert len(loaded['annotation']['elements']) == 4
# Test old
resp = server.request('/annotation/old', method='GET', user=user)
assert utilities.respStatus(resp) == 403
resp = server.request('/annotation/old', method='GET', user=admin)
assert utilities.respStatus(resp) == 200
assert resp.json['abandonedVersions'] == 0
resp = server.request('/annotation/old', method='DELETE', user=admin)
assert utilities.respStatus(resp) == 200
assert resp.json['abandonedVersions'] == 0
resp = server.request('/annotation/old',
method='DELETE',
user=admin,
params={'age': 6})
assert utilities.respStatus(resp) == 400
assert 'minAgeInDays' in resp.json['message']
def testGetElements(self, admin):
publicFolder = utilities.namedFolder(admin, 'Public')
item = Item().createItem('sample', admin, publicFolder)
largeSample = makeLargeSampleAnnotation()
# Use a copy of largeSample so we don't just have a referecne to it
annot = Annotation().createAnnotation(item, admin, largeSample.copy())
# Clear existing element data, the get elements
annot.pop('elements', None)
annot.pop('_elementQuery', None)
Annotationelement().getElements(annot)
assert '_elementQuery' in annot
assert len(annot['annotation']['elements']) == len(
largeSample['elements']) # 7707
assert 'centroids' not in annot['_elementQuery']
annot.pop('elements', None)
annot.pop('_elementQuery', None)
Annotationelement().getElements(annot, {'limit': 100})
assert '_elementQuery' in annot
assert annot['_elementQuery']['count'] == len(largeSample['elements'])
assert annot['_elementQuery']['returned'] == 100
assert len(annot['annotation']['elements']) == 100
annot.pop('elements', None)
annot.pop('_elementQuery', None)
Annotationelement().getElements(annot, {
'left': 3000,
'right': 4000,
'top': 4500,
'bottom': 6500
})
assert len(annot['annotation']['elements']) == 157
annot.pop('elements', None)
annot.pop('_elementQuery', None)
Annotationelement().getElements(
annot, {
'left': 3000,
'right': 4000,
'top': 4500,
'bottom': 6500,
'minimumSize': 16
})
assert len(annot['annotation']['elements']) == 39
annot.pop('elements', None)
annot.pop('_elementQuery', None)
Annotationelement().getElements(annot, {'maxDetails': 300})
assert len(annot['annotation']['elements']) == 75
annot.pop('elements', None)
annot.pop('_elementQuery', None)
Annotationelement().getElements(annot, {
'maxDetails': 300,
'sort': 'size',
'sortdir': -1
})
elements = annot['annotation']['elements']
assert (elements[0]['width'] * elements[0]['height'] >
elements[-1]['width'] * elements[-1]['height'])
annot.pop('elements', None)
annot.pop('_elementQuery', None)
Annotationelement().getElements(annot, {
'maxDetails': 300,
'sort': 'size',
'sortdir': 1
})
elements = annot['annotation']['elements']
assert (elements[0]['width'] * elements[0]['height'] <
elements[-1]['width'] * elements[-1]['height'])