def terminus_lines(img, markup, correction=True, step=None):
"""
Return terminus Lines object for an Image.
Arguments:
img (Image): Image object
markup (dict): Parsed SVG layer
correction: Whether Lines should use elevation correction (bool)
or arguments to `glimpse.helpers.elevation_corrections()`
"""
luv = tuple(markup.values())
# HACK: Select terminus with matching date and preferred type
termini = Termini()
date_str = img.datetime.strftime('%Y-%m-%d')
features = [(feature, feature['properties']['type']) for feature in termini
if feature['properties']['date'] == date_str]
type_order = ('aerometric', 'worldview', 'landsat-8', 'landsat-7',
'terrasar', 'tandem', 'arcticdem', 'landsat-5')
order = [type_order.index(f[1]) for f in features]
xy = features[np.argmin(order)[0]]['geometry']['coordinates']
xyz = np.hstack((xy, sea_height(xy, t=img.datetime)))
return glimpse.optimize.Lines(img.cam,
luv, [xyz],
correction=correction,
step=step)
def coast_lines(img, markup, correction=True, step=None):
"""
Return coast Lines object for an Image.
Arguments:
img (Image): Image object
markup (dict): Parsed SVG layer
correction (bool): Whether to set Lines to use elevation correction
"""
luv = tuple(markup.values())
geo = glimpse.helpers.read_geojson(os.path.join(CG_PATH, 'geojson',
'coast.geojson'),
crs=32606)
lxy = [feature['geometry']['coordinates'] for feature in geo['features']]
lxyz = [np.hstack((xy, sea_height(xy, t=img.datetime))) for xy in lxy]
return glimpse.optimize.Lines(img.cam,
luv,
lxyz,
correction=correction,
step=step)
def compute_arthz_sigma(vrthz_sigma, flotation):
return np.hstack((
vrthz_sigma[0] * ar_sigma_scale,
dtheta_sigma,
np.maximum(flotation * flotation_az_sigma, min_az_sigma)
))
def compute_vrthz_sigma(vrthz_sigma, flotation):
return np.hstack((
vrthz_sigma[0] * (1 + short_vr_sigma),
vrthz_sigma[1],
vrthz_sigma[2] + np.maximum(flotation * flotation_vz_sigma, min_vz_sigma)
))
def compute_axyz_sigma(vxyz_sigma, flotation):
return np.hstack((
vxyz_sigma[0:2] * axy_sigma_scale,
np.maximum(flotation * flotation_az_sigma, min_az_sigma)
))
def compute_vxyz_sigma(vxyz_sigma, flotation):
return np.hstack((
vxyz_sigma[0:2] * (1 + short_vxy_sigma),
vxyz_sigma[2] + np.maximum(flotation * flotation_vz_sigma, min_vz_sigma)
))
last_vxy = tracks[i].vxyz[mask, last, 0:2]
last_vxy_sigma = tracks[i].vxyz_sigma[mask, last, 0:2]
vxy_motion_models = [copy.copy(model) for model in motion_models]
if cylindrical:
for j, model in enumerate(np.array(vxy_motion_models)[mask]):
# Estimate cylindrical priors from cartesian results
vxy = last_vxy[j] + last_vxy_sigma[j] * np.random.randn(100, 2)
speed = np.hypot(vxy[:, 0], vxy[:, 1])
vr, vr_sigma = speed.mean(), speed.std()
thetas = np.arctan2(vxy[:, 1], vxy[:, 0])
unit_yx = (
np.sin(thetas).mean(),
np.cos(thetas).mean())
theta = np.arctan2(*unit_yx)
theta_sigma = np.sqrt(-2 * np.log(np.hypot(*unit_yx)))
model.vrthz = np.hstack((vr, theta, model.vrthz[2]))
model.vrthz_sigma = np.hstack((vr_sigma, theta_sigma,
model.vrthz_sigma[2]))
else:
for j, model in enumerate(np.array(vxy_motion_models)[mask]):
model.vxyz = np.hstack((last_vxy[j], model.vxyz[2]))
model.vxyz_sigma = np.hstack((last_vxy_sigma[j], model.vxyz_sigma[2]))
# Repeat track
tracks[i + 1] = tracker.track(motion_models=vxy_motion_models,
observer_mask=params['observer_mask'], tile_size=tile_size,
parallel=parallel, datetimes=tracker.datetimes[::directions[i + 1]])
# ---- Clean up tracks ----
# Clean up tracker, since saved in Tracks.tracker
tracker.reset()
# Clear cached images, since saved in Tracks.tracker.observers
for observer in observers:
def load_images(station,
services,
use_exif=False,
service_exif=False,
anchors=False,
viewdir=True,
viewdir_as_anchor=False,
file_errors=True,
**kwargs):
"""
Return list of calibrated Image objects.
Any available station, camera, image, and viewdir calibrations are loaded
and images with image calibrations are marked as anchors.
Arguments:
station (str): Station identifier
services (iterable): Service identifiers
use_exif (bool): Whether to parse image datetimes from EXIF (slower)
rather than parsed from paths (faster)
service_exif (bool): Whether to extract EXIF from first image (faster)
or all images (slower) in service.
If `True`, `Image.datetime` is parsed from path.
Always `False` if `use_exif=True`.
anchors (bool): Whether to include anchor images even if
filtered out by `kwargs['snap']`
**kwargs: Arguments to `glimpse.helpers.select_datetimes()`
"""
if use_exif:
service_exif = False
# Sort services in time
if isinstance(services, str):
services = services,
services = np.sort(services)
# Parse datetimes of all candidate images
paths_service = [
glob.glob(
os.path.join(IMAGE_PATH, station, station + '_' + service,
'*.JPG')) for service in services
]
paths = np.hstack(paths_service)
basenames = [glimpse.helpers.strip_path(path) for path in paths]
if use_exif:
exifs = [glimpse.Exif(path) for path in paths]
datetimes = np.array([exif.datetime for exif in exifs])
else:
datetimes = paths_to_datetimes(basenames)
# Select images based on datetimes
indices = glimpse.helpers.select_datetimes(datetimes, **kwargs)
if anchors:
# Add anchors
# HACK: Ignore any <image>-<suffix>.json files
anchor_paths = glob.glob(
os.path.join(CG_PATH, 'images', station + '_*[0-9].json'))
anchor_basenames = [
glimpse.helpers.strip_path(path) for path in anchor_paths
]
if 'start' in kwargs or 'end' in kwargs:
# Filter by start, end
anchor_datetimes = np.asarray(paths_to_datetimes(anchor_basenames))
inrange = glimpse.helpers.select_datetimes(
anchor_datetimes,
**glimpse.helpers.merge_dicts(kwargs, dict(snap=None)))
anchor_basenames = np.asarray(anchor_basenames)[inrange]
anchor_indices = np.where(np.isin(basenames, anchor_basenames))[0]
indices = np.unique(np.hstack((indices, anchor_indices)))
service_breaks = np.hstack((0, np.cumsum([len(x) for x in paths_service])))
station_calibration = load_calibrations(station_estimate=station,
station=station,
merge=True,
file_errors=False)
images = []
for i, service in enumerate(services):
index = indices[(indices >= service_breaks[i])
& (indices < service_breaks[i + 1])]
if not index.size:
continue
service_calibration = glimpse.helpers.merge_dicts(
station_calibration,
load_calibrations(path=paths[index[0]],
camera=True,
merge=True,
file_errors=file_errors))
if service_exif:
exif = glimpse.Exif(paths[index[0]])
for j in index:
basename = basenames[j]
calibrations = load_calibrations(
image=basename,
viewdir=basename if viewdir else False,
station_estimate=station,
merge=False,
file_errors=False)
if calibrations['image']:
calibration = glimpse.helpers.merge_dicts(
service_calibration, calibrations['image'])
anchor = True
else:
calibration = glimpse.helpers.merge_dicts(
service_calibration,
dict(viewdir=calibrations['station_estimate']['viewdir']))
anchor = False
if viewdir and calibrations['viewdir']:
calibration = glimpse.helpers.merge_dicts(
calibration, calibrations['viewdir'])
if viewdir_as_anchor:
anchor = True
if use_exif:
exif = exifs[j]
elif not service_exif:
exif = None
if KEYPOINT_PATH:
keypoint_path = os.path.join(KEYPOINT_PATH, basename + '.pkl')
else:
keypoint_path = None
image = glimpse.Image(path=paths[j],
cam=calibration,
anchor=anchor,
exif=exif,
datetime=None if use_exif else datetimes[j],
keypoints_path=keypoint_path)
images.append(image)
return images