def test_2_match_ions_step(self):
print("test_2_match_ions_step")
matches = entry_point.match_deconvoluted_ions(
self.db_file_name, self.ms2_decon_file,
self.ms1_match_tolerance, self.ms2_match_tolerance, self.num_procs)
self.assertTrue(os.path.exists(matches))
self.ms2_match_file = matches
print(self.ms2_match_file)
def main():
args = app.parse_args()
out = match_deconvoluted_ions(
args.search_space,
args.deconvoluted_spectra_file,
args.ms1_match_tolerance,
args.ms2_match_tolerance,
4)
out = postprocess_matches(out)
out = classify_data_by_model(out, args.model_file)
out = calculate_false_discovery_rate(out, deconvoluted_spectra=args.deconvoluted_spectra_file, model_file_path=args.model_file)
