def __init__(self,
name_pattern,
directory,
scan_range=360,
scan_exposure_time=3.6,
scan_start_angle=0,
zoom=None,
frontlight=False):
experiment.__init__(self,
name_pattern=name_pattern,
directory=directory)
self.scan_range = scan_range
self.scan_exposure_time = scan_exposure_time
self.scan_start_angle = scan_start_angle
self.zoom = zoom
self.frontlight = frontlight
self.camera = camera()
self.goniometer = goniometer()
self.fastshutter = fast_shutter()
self.md2_task_info = None
self.images = []
self.parameter_fields = self.parameter_fields.union(
film.specific_parameter_fields)
def __init__(
self,
scan_range,
scan_exposure_time,
scan_start_angle,
angle_per_frame,
name_pattern,
directory,
image_nr_start,
position=None,
photon_energy=None,
flux=None,
transmission=None,
):
self.goniometer = goniometer()
self.detector = detector()
self.beam_center = beam_center()
self.energy_motor = energy_motor()
self.resolution_motor = resolution_motor()
self.protective_cover = protective_cover()
self.transmission_motor = transmission_motor()
self.scan_range = scan_range
self.scan_exposure_time = scan_exposure_time
self.scan_start_angle = scan_start_angle
self.angle_per_frame = angle_per_frame
self.image_nr_start = image_nr_start
self.position = position
self.photon_energy = photon_energy
self.flux = flux
self.transmission = transmission
self.name_pattern = name_pattern
self.directory = directory
self._ntrigger = 1
super(self, experiment).__init__()
def __init__(self,
scan_range,
scan_exposure_time,
scan_start_angles, #this is an iterable
angle_per_frame,
name_pattern,
directory='/nfs/ruchebis/spool/2016_Run3/orphaned_collects',
image_nr_start=1):
self.goniometer = goniometer()
self.detector = detector()
self.beam_center = beam_center()
scan_range = float(scan_range)
scan_exposure_time = float(scan_exposure_time)
nimages = float(scan_range)/angle_per_frame
frame_time = scan_exposure_time/nimages
self.scan_range = scan_range
self.scan_exposure_time = scan_exposure_time
self.scan_start_angles = scan_start_angles
self.angle_per_frame = angle_per_frame
self.nimages = int(nimages)
self.frame_time = float(frame_time)
self.count_time = self.frame_time - self.detector.get_detector_readout_time()
self.name_pattern = name_pattern
self.directory = directory
self.image_nr_start = image_nr_start
self.status = None
def __init__(self,
device_name='i11-ma-cx1/dt/dtc-mca_xmap.1',
channel='channel00',
sleeptime=0.01):
self.device = PyTango.DeviceProxy(device_name)
self.channel = channel
self.goniometer = goniometer()
self.sleeptime = sleeptime
self._calibration = -16.1723871876, 9.93475667754, 0.0
self.observe = None
def __init__(self,
vertical_range,
horizontal_range,
number_of_rows,
number_of_columns,
scan_exposure_time,
scan_start_angle=None,
scan_range=0.01,
image_nr_start=1,
scan_axis='horizontal', # 'horizontal' or 'vertical'
direction_inversion=True,
method='md2', # possible methods: "md2", "helical"
zoom=None, # by default use the current zoom
name_pattern='grid_$id',
directory='/nfs/ruchebis/spool/2016_Run3/orphaned_collects'):
self.goniometer = goniometer()
self.detector = detector()
self.camera = camera()
self.guillotine = protective_cover()
self.beam_center = beam_center()
self.scan_axis = scan_axis
self.method = method
self.vertical_range = vertical_range
self.horizontal_range = horizontal_range
self.shape = numpy.array((number_of_rows, number_of_columns))
self.number_of_rows = number_of_rows
self.number_of_columns = number_of_columns
self.frame_time = scan_exposure_time
self.count_time = self.frame_time - self.detector.get_detector_readout_time()
self.scan_start_angle = scan_start_angle
self.scan_range = scan_range
if self.scan_axis == 'horizontal':
self.line_scan_time = self.frame_time * self.number_of_columns
self.angle_per_frame = self.scan_range / self.number_of_columns
else:
self.line_scan_time = self.frame_time * self.number_of_rows
self.angle_per_frame = self.scan_range / self.number_of_rows
self.image_nr_start = image_nr_start
self.direction_inversion = direction_inversion
self.name_pattern = name_pattern
self.directory = directory
self.method = method
self.zoom = zoom
super(self, experiment).__init__()
def __init__(self, *args):
"""
Description:
"""
GenericDiffractometer.__init__(self, *args)
# Hardware objects ----------------------------------------------------
self.zoom_motor_hwobj = None
self.omega_reference_motor = None
self.centring_hwobj = None
self.minikappa_correction_hwobj = None
self.nclicks = None
self.step = None
self.centring_method = None
self.collecting = False
# Channels and commands -----------------------------------------------
self.chan_calib_x = None
self.chan_calib_y = None
self.chan_current_phase = None
self.chan_head_type = None
self.chan_fast_shutter_is_open = None
self.chan_state = None
self.chan_status = None
self.chan_sync_move_motors = None
self.chan_scintillator_position = None
self.chan_capillary_position = None
self.cmd_start_set_phase = None
self.cmd_start_auto_focus = None
self.cmd_get_omega_scan_limits = None
self.cmd_save_centring_positions = None
self.centring_time = None
# Internal values -----------------------------------------------------
self.use_sc = False
self.omega_reference_pos = [0, 0]
self.reference_pos = [680, 512]
self.goniometer = goniometer()
self.camera = camera()
self.detector = detector()
self.md2_to_mxcube = dict(
[(key, value) for key, value in self.motor_name_mapping]
)
self.mxcube_to_md2 = dict(
[(value, key) for key, value in self.motor_name_mapping]
)
self.log = logging.getLogger("HWR")
def __init__(self,
directory,
name_pattern='pe_%.3feV_ts_%.3fmm_tx_%.3fmm_tz_%.3fmm_$id',
photon_energies=None,
tss=None,
txs=None,
tzs=None,
scan_range=0.1,
scan_exposure_time=0.025,
angle_per_frame=0.1,
direct_beam=True,
analysis=None,
handle_detector_beamstop=False):
experiment.__init__(self,
name_pattern=name_pattern,
directory=directory,
analysis=analysis)
self.directory = directory
self.name_pattern = name_pattern
self.photon_energies = photon_energies
self.tss = tss
self.txs = txs
self.tzs = tzs
self.scan_range = scan_range
self.scan_exposure_time = scan_exposure_time
self.angle_per_frame = angle_per_frame
self.direct_beam = direct_beam
self.nimages = int(self.scan_range / self.angle_per_frame)
#actuators
self.detector = detector()
self.goniometer = goniometer()
self.energy_motor = energy_motor()
self.transmission_motor = transmission_motor()
self.capillary_park_position = 80
self.aperture_park_position = 80
self.detector_beamstop_park_position = 18.5
self.handle_detector_beamstop = handle_detector_beamstop
self.parameter_fields = self.parameter_fields.union(
beamcenter_calibration.specific_parameter_fields)
print 'self.parameter_fields', self.parameter_fields
def __init__(self,
scan_range,
scan_exposure_time,
scan_start_angle,
angle_per_frame,
name_pattern,
directory='/nfs/ruchebis/spool/2016_Run3/orphaned_collects',
image_nr_start=1,
helical=False):
self.goniometer = goniometer()
self.detector = detector()
self.beam_center = beam_center()
self.protective_cover = protective_cover()
self.detector.set_trigger_mode('exts')
self.detector.set_nimages_per_file(100)
self.detector.set_ntrigger(1)
scan_range = float(scan_range)
scan_exposure_time = float(scan_exposure_time)
nimages, rest = divmod(scan_range, angle_per_frame)
if rest > 0:
nimages += 1
scan_range += rest*angle_per_frame
scan_exposure_time += rest*angle_per_frame/scan_range
frame_time = scan_exposure_time/nimages
self.scan_range = scan_range
self.scan_exposure_time = scan_exposure_time
self.scan_start_angle = scan_start_angle
self.angle_per_frame = angle_per_frame
self.nimages = int(nimages)
self.frame_time = float(frame_time)
self.count_time = self.frame_time - self.detector.get_detector_readout_time()
self.name_pattern = name_pattern
self.directory = directory
self.image_nr_start = image_nr_start
self.helical = helical
self.status = None
def __init__(self,
scan_range,
scan_exposure_time,
scan_start_angle,
angle_per_frame,
name_pattern,
directory='/nfs/ruchebis/spool/2016_Run3/orphaned_collects',
image_nr_start=1,
helical=False):
self.goniometer = goniometer()
self.detector = detector()
self.beam_center = beam_center()
self.detector.set_trigger_mode('exts')
self.detector.set_nimages_per_file(100)
self.detector.set_ntrigger(1)
scan_range = float(scan_range)
scan_exposure_time = float(scan_exposure_time)
nimages, rest = divmod(scan_range, angle_per_frame)
if rest > 0:
nimages += 1
scan_range += rest*angle_per_frame
scan_exposure_time += rest*angle_per_frame/scan_range
frame_time = scan_exposure_time/nimages
self.scan_range = scan_range
self.scan_exposure_time = scan_exposure_time
self.scan_start_angle = scan_start_angle
self.angle_per_frame = angle_per_frame
self.nimages = int(nimages)
self.frame_time = float(frame_time)
self.count_time = self.frame_time - self.detector.get_detector_readout_time()
self.name_pattern = name_pattern
self.directory = directory
self.image_nr_start = image_nr_start
self.helical = helical
self.status = None
def __init__(self,
name_pattern,
directory,
step=36,
orientations=[],
analysis=True,
conclusion=True):
experiment.__init__(self,
name_pattern,
directory,
analysis=analysis,
conclusion=conclusion)
self.goniometer = goniometer()
self.camera = camera()
self.step = step
self.orientations = orientations
self.observations = []
self.observe = False
def __init__(self,
name_pattern,
directory,
position=None,
photon_energy=None,
resolution=None,
detector_distance=None,
detector_vertical=None,
detector_horizontal=None,
transmission=None,
flux=None,
ntrigger=1,
snapshot=False,
zoom=None,
diagnostic=None,
analysis=None,
conclusion=None,
simulation=None,
monitor_sleep_time=0.05):
experiment.__init__(self,
name_pattern=name_pattern,
directory=directory,
diagnostic=diagnostic,
analysis=analysis,
conclusion=conclusion,
simulation=simulation)
self.position = position
self.photon_energy = photon_energy
self.resolution = resolution
self.detector_distance = detector_distance
self.detector_vertical = detector_vertical
self.detector_horizontal = detector_horizontal
self.transmission = transmission
self.flux = flux
self.ntrigger = ntrigger
self.snapshot = snapshot
self.zoom = zoom
self.monitor_sleep_time = monitor_sleep_time
# Necessary equipment
self.goniometer = goniometer()
try:
self.beam_center = beam_center()
except:
from beam_center import beam_center_mockup
self.beam_center = beam_center_mockup()
try:
self.detector = detector()
except:
from detector_mockup import detector_mockup
self.detector = detector_mockup()
try:
self.energy_motor = energy_motor()
except:
from energy import energy_mockup
self.energy_motor = energy_mockup()
try:
self.resolution_motor = resolution_motor()
except:
from resolution import resolution_mockup
self.resolution_motor = resolution_mockup()
try:
self.transmission_motor = transmission_motor()
except:
from transmission import transmission_mockup
self.transmission_motor = transmission_mockup()
try:
self.machine_status = machine_status()
except:
from machine_status import machine_status_mockup
self.machine_status = machine_status_mockup()
try:
self.undulator = undulator()
except:
from motor import undulator_mockup
self.undulator = undulator_mockup()
try:
self.monochromator_rx_motor = monochromator_rx_motor()
except:
from motor import monochromator_rx_motor_mockup
self.monochromator_rx_motor_mockup = monochromator_rx_motor_mockup(
)
self.safety_shutter = safety_shutter()
try:
self.fast_shutter = fast_shutter()
except:
self.fast_shutter = fast_shutter_mockup()
try:
self.camera = camera()
except:
self.camera = None
if self.photon_energy == None and self.simulation != True:
self.photon_energy = self.get_current_photon_energy()
self.wavelength = self.resolution_motor.get_wavelength_from_energy(
self.photon_energy)
try:
self.slits1 = slits1()
except:
self.slits1 = slits_mockup(1)
try:
self.slits2 = slits2()
except:
self.slits2 = slits_mockup(2)
try:
self.slits3 = slits3()
except:
self.slits3 = slits_mockup(3)
try:
self.slits5 = slits5()
except:
self.slits5 = slits_mockup(5)
try:
self.slits6 = slits6()
except:
self.slits6 = slits_mockup(6)
try:
self.xbpm1 = xbpm('i11-ma-c04/dt/xbpm_diode.1-base')
except:
self.xbpm1 = xbpm_mockup('i11-ma-c04/dt/xbpm_diode.1-base')
try:
self.cvd1 = xbpm('i11-ma-c05/dt/xbpm-cvd.1-base')
except:
self.cvd1 = xbpm_mockup('i11-ma-c05/dt/xbpm-cvd.1-base')
try:
self.xbpm5 = xbpm('i11-ma-c06/dt/xbpm_diode.5-base')
except:
self.xbpm5 = xbpm_mockup('i11-ma-c06/dt/xbpm_diode.5-base')
try:
self.psd5 = xbpm('i11-ma-c06/dt/xbpm_diode.psd.5-base')
except:
self.psd5 = xbpm_mockup('i11-ma-c06/dt/xbpm_diode.psd.5-base')
try:
self.psd6 = xbpm('i11-ma-c06/dt/xbpm_diode.6-base')
except:
self.psd6 = xbpm_mockup('i11-ma-c06/dt/xbpm_diode.6-base')
self.eiger_en_out = eiger_en_out()
self.trigger_eiger_on = trigger_eiger_on()
self.trigger_eiger_off = trigger_eiger_off()
self.fast_shutter_open = fast_shutter_open()
self.fast_shutter_close = fast_shutter_close()
self.monitor_names = [
'xbpm1',
'cvd1',
#'xbpm5',
'psd5',
'psd6',
'machine_status',
'fast_shutter',
'eiger_en_out',
'trigger_eiger_on',
'trigger_eiger_off',
'fast_shutter_open',
'fast_shutter_close'
]
self.monitors = [
self.xbpm1,
self.cvd1,
#self.xbpm5,
self.psd5,
self.psd6,
self.machine_status,
self.fast_shutter,
self.eiger_en_out,
self.trigger_eiger_on,
self.trigger_eiger_off,
self.fast_shutter_open,
self.fast_shutter_close
]
self.monitors_dictionary = {
'xbpm1': self.xbpm1,
'cvd1': self.cvd1,
#'xbpm5': self.xbpm5,
'psd5': self.psd5,
'psd6': self.psd6,
'machine_status': self.machine_status,
'fast_shutter': self.fast_shutter,
'eiger_en_out': self.eiger_en_out,
'trigger_eiger_on': self.trigger_eiger_on,
'trigger_eiger_off': self.trigger_eiger_off,
'fast_shutter_open': self.fast_shutter_open,
'fast_shutter_close': self.fast_shutter_close
}
self.parameter_fields = self.parameter_fields.union(
xray_experiment.specific_parameter_fields)
def __init__(self): super(film, self).__init__() camera = camera() goniometer = goniometer()
#!/usr/bin/env python
from detector import detector
from goniometer import goniometer
from sweep import sweep
from reference_images import reference_images
from beam_center import beam_center
from raster import raster
from protective_cover import protective_cover
from camera import camera
from resolution import resolution
if __name__ == '__main__':
import optparse
parser = optparse.OptionParser()
# testbed ip 62.12.151.50
parser.add_option('-i', '--ip', default="172.19.10.26", type=str, help='IP address of the server')
parser.add_option('-p', '--port', default=80, type=int, help='port on which to which it listens to')
options, args = parser.parse_args()
d = detector(host=options.ip, port=options.port)
g = goniometer()