def test_dna_strange_character_replace(self):
create = Create(prerequisites)
seqs = [Sequence('namer','ATGC')]
create._mask_strange_sequence_letters(seqs, Create._NUCLEOTIDE_PACKAGE_TYPE)
self.assertEqual(1, len(seqs))
self.assertEqual('ATGC', str(seqs[0].seq))
seqs = [Sequence('namer','ATGCRTWU')]
create._mask_strange_sequence_letters(seqs, Create._NUCLEOTIDE_PACKAGE_TYPE)
self.assertEqual(1, len(seqs))
self.assertEqual('ATGCNTNT', str(seqs[0].seq))
def test_strange_character_replace(self):
create = Create(prerequisites)
seqs = [Sequence('namer','SEQWENCE')]
create._mask_strange_sequence_letters(seqs, Create._PROTEIN_PACKAGE_TYPE)
self.assertEqual(1, len(seqs))
self.assertEqual('SEQWENCE', str(seqs[0].seq))
seqs = [Sequence('namer','SEQUENCE')]
create._mask_strange_sequence_letters(seqs, Create._PROTEIN_PACKAGE_TYPE)
self.assertEqual(1, len(seqs))
self.assertEqual('SEQXENCE', str(seqs[0].seq))
def test_dna_strange_character_replace(self):
create = Create(prerequisites)
seqs = [Sequence('namer', 'ATGC')]
create._mask_strange_sequence_letters(seqs,
Create._NUCLEOTIDE_PACKAGE_TYPE)
self.assertEqual(1, len(seqs))
self.assertEqual('ATGC', str(seqs[0].seq))
seqs = [Sequence('namer', 'ATGCRTWU')]
create._mask_strange_sequence_letters(seqs,
Create._NUCLEOTIDE_PACKAGE_TYPE)
self.assertEqual(1, len(seqs))
self.assertEqual('ATGCNTNT', str(seqs[0].seq))
def test_strange_character_replace(self):
create = Create(prerequisites)
seqs = [Sequence('namer', 'SEQWENCE')]
create._mask_strange_sequence_letters(seqs,
Create._PROTEIN_PACKAGE_TYPE)
self.assertEqual(1, len(seqs))
self.assertEqual('SEQWENCE', str(seqs[0].seq))
seqs = [Sequence('namer', 'SEQUENCE')]
create._mask_strange_sequence_letters(seqs,
Create._PROTEIN_PACKAGE_TYPE)
self.assertEqual(1, len(seqs))
self.assertEqual('SEQXENCE', str(seqs[0].seq))