def runScattering(acqEntries, configSetting):
for seqIndex in range(len(acqEntries)):
acqEntry = acqEntries[seqIndex]
sampleEntry = samples[acqEntry['sample']]
# Click if runnable
if isRunScattering(acqEntry['runId']):
# Set sample
quokka.setSample(sampleEntry['position'], sampleEntry['name'], sampleEntry['description'], sampleEntry['thickness'], isDriveSampleStage())
# Clear transmission flag
sics.set('transmissionflag', 0)
sleep(0.1)
# Set attenuation
log('Finding safe attenuation value ...')
startingAttenuation = driveSafeAttenuation(configSetting['manualAttenuationAlgorithm'], configSetting['startingAttenuation'])
# Acquire data
mode = configSetting['scatteringMode']
preset = getScatteringPreset(acqEntry['runId'], acqEntry['preset'])
updateScatteringRunState(acqEntry['runId'], True)
log('Start scattering run on ' + sampleEntry['name'] + ' (mode: ' + mode.key + ', preset: ' + str(preset) + ') ... ')
# Scan (force scan if this is a dark current scan)
dataFile = scan(mode, dataType.HISTOGRAM_XY, preset, getForcedScanValue(sampleEntry['type']))
# Update data file name
updateScatteringRunState(acqEntry['runId'], False)
updateScatteringDetails(acqEntry['runId'], dataFile[-14:-7], getLambdaValue(), getAttValue(), getL1Value(), getL2Value())
# Print instrument state
sleep(0.2)
# Drive attenuation back safer value
log('Drive attenuation back to safe value ...')
if startingAttenuation is None:
startingAttenuation = 300
driveAtt(startingAttenuation)
quokka.printQuokkaSettings()
def driveFlipper(value):
slog('Driving flipper to %s ...' % value)
# make sure that value is int
value = int(value)
counter = 0
while True:
try:
counter += 1
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
sics.handleInterrupt()
sics.set('/instrument/flipper/set_flip_on', value)
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
sics.handleInterrupt()
if getFlipper() != value:
raise Exception('unable to set Flipper')
break
except (Exception, SicsExecutionException) as e:
if isInterruptException(e) or (counter >= 20):
raise
slog('Retry setting Flipper')
time.sleep(1)
slog('Flipper is set to %s' % getFlipper())
def driveFlipper(value):
# Clear interrupt flag
sics.getSicsController().clearInterrupt()
# Set timeout to 120 sec
timeout = 120
counter = 0
# Set flipper
sics.set('/instrument/flipper/set_flip_on', value)
log('Driving flipper to ' + str(value) + "...")
while True:
flipperValue = sics.getValue('/instrument/flipper/flip_on').getIntData()
# Test if value is set
if flipperValue == value:
log('Flipper is set to ' + str(flipperValue))
return
else:
# Check timeout
if counter >= timeout:
raise Exception('Failed to set flipper to ' + str(value))
# Check interrupt
if sics.getSicsController().isInterrupted() == 1:
raise Exception('SICS has been interrupted')
# Otherwise sleep for 1 sec
counter += 1
time.sleep(1)
def driveGuide(guideConfig):
# Set configuration
if hasattr(guideConfig, 'key'):
guideConfig = guideConfig.key
sics.set('/commands/optics/guide/configuration', guideConfig)
log('Moving guide to ' + guideConfig)
sicsController = SicsCore.getSicsController()
commandController = sicsController.findComponentController('/commands/optics/guide')
# Setting of configuration and starting a command are committed to SICS via different communication channels
# In order to make those in sync, we need to wait for the configuration to be settled.
time.sleep(0.1)
# Start command now
cnt = 0
while cnt < 20:
try:
commandController.syncExecute();
break
except SicsExecutionException, e:
em = str(e.getMessage())
if em.__contains__('Interrupted'):
raise e
log('retry moving guide to ' + str(guideConfig))
time.sleep(1)
while not sicsController.getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.3)
cnt += 1
def multi_run():
# sics.drive('att', 300)
# sics.drive('nvs_lambda', 10)
# sleep(0.1)
# scan_att_katy(120, 30, 5, [1200 , 1200, 1800, 3600, 7200])
# sics.drive('att', 330)
# sics.drive('nvs_lambda', 10)
# sleep(0.1)
# sleep(0.1)
# scan_att_katy(210, 30, 5, [1200 , 600, 1200, 1800, 3600])
# sics.drive('att', 330)
# sics.drive('att', 330)
# sics.drive('nvs_lambda', 11)
# sleep(0.1)
# sleep(0.1)
# sleep(0.1)
# scan_att_katy(180, 30, 6, [1200 , 600, 1200, 1800, 3600, 3600])
# sics.drive('att', 330)
sics.drive('att', 330)
sleep(0.1)
sleep(0.1)
scan_att_katy(300, 30, 2, [600 , 14400])
sics.drive('att', 330)
sics.set('/instrument/detector/detector_y/speed', 53)
driveDet(19250, 0)
sics.drive('att', 330)
sleep(0.1)
sleep(0.1)
scan_att_katy(330, 30, 1, [14400])
sics.drive('att', 330)
def driveFlipper(value):
# Clear interrupt flag
sics.getSicsController().clearInterrupt()
# Set timeout to 120 sec
timeout = 120
counter = 0
# Set flipper
sics.set('/instrument/flipper/set_flip_on', value)
log('Driving flipper to ' + str(value) + "...")
while True:
flipperValue = sics.getValue('/instrument/flipper/flip_on').getIntData()
# Test if value is set
if flipperValue == value:
log('Flipper is set to ' + str(flipperValue))
return
else:
# Check timeout
if counter >= timeout:
raise Exception('Failed to set flipper to ' + str(value))
# Check interrupt
if sics.getSicsController().isInterrupted() == 1:
raise Exception('SICS has been interrupted')
# Otherwise sleep for 1 sec
counter += 1
time.sleep(1)
def driveFlipper(value):
slog('Driving flipper to %s ...' % value)
# make sure that value is int
value = int(value)
counter = 0
while True:
try:
counter += 1
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
sics.handleInterrupt()
sics.set('/instrument/flipper/set_flip_on', value)
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
sics.handleInterrupt()
if getFlipper() != value:
raise Exception('unable to set Flipper')
break
except (Exception, SicsExecutionException) as e:
if isInterruptException(e) or (counter >= 20):
raise
slog('Retry setting Flipper')
time.sleep(1)
slog('Flipper is set to %s' % getFlipper())
def runTransmission(acqEntries, configSetting):
for seqIndex in range(len(acqEntries)):
acqEntry = acqEntries[seqIndex]
sampleEntry = samples[acqEntry['sample']]
# Click if runnable
if isRunTransmission(acqEntry['runId']):
# Set sample
quokka.setSample(sampleEntry['position'], sampleEntry['name'], sampleEntry['description'], sampleEntry['thickness'], isDriveSampleStage())
# Set transmission flag
sics.set('transmissionflag', 1)
sleep(0.1)
# Set attenuation
# Acquire data
mode = configSetting['transmissionMode']
preset = configSetting['transmissionPreset']
updateTransmissionRunState(acqEntry['runId'], True)
log('Start transmission run on ' + sampleEntry['name'] + ' ...')
dataFile = scan(mode, dataType.HISTOGRAM_XY, preset, getForcedScanValue(sampleEntry['type']))
# Update data file name
updateTransmissionRunState(acqEntry['runId'], False)
updateTransmissionDetails(acqEntry['runId'], dataFile[-14:-7], getLambdaValue(), getAttValue(), getL1Value(), getL2Value())
# Print instrument state
sleep(0.2)
quokka.printQuokkaSettings()
def driveGuide(guideConfig):
# Set configuration
sics.set('/commands/optics/guide/configuration', guideConfig.key)
log('Moving guide to ' + guideConfig.key)
sicsController = SicsCore.getSicsController()
commandController = sicsController.findComponentController('/commands/optics/guide')
# Setting of configuration and starting a command are committed to SICS via different communication channels
# In order to make those in sync, we need to wait for the configuration to be settled.
time.sleep(0.1)
# Start command now
cnt = 0
while cnt < 20:
try:
commandController.syncExecute();
break
except SicsExecutionException, e:
em = str(e.getMessage())
if em.__contains__('Interrupted'):
raise e
log('retry moving guide to ' + str(guideConfig.key))
time.sleep(1)
while not sicsController.getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.3)
cnt += 1
def setTemperature(setpoint, heaterRange, waitForTemperature, tempSettleTime):
slog('set tc1 heater range=' + str(heaterRange))
sics.set('/sample/tc1/heater/heaterRange',heaterRange)
if waitForTemperature==0:
slog('set sample T=' + str(setpoint) + ' & not wait for it')
sics.run('tc1_driveable', setpoint)
else:
slog('set sample T=' + str(setpoint) + ' & wait till it is reached')
sics.drive('tc1_driveable', setpoint)
sleep(tempSettleTime)
slog('waiting '+ str(tempSettleTime) +'sec for temperature to settle')
def driveGuide(guideConfig):
# Set configuration
sics.set('/commands/optics/guide/configuration', guideConfig.key)
log('Moving guide to ' + guideConfig.key)
sicsController = SicsCore.getSicsController()
commandController = sicsController.findComponentController('/commands/optics/guide')
# Setting of configuration and starting a command are committed to SICS via different communication channels
# In order to make those in sync, we need to wait for the configuration to be settled.
time.sleep(0.1)
# Start command now
commandController.syncExecute();
log('Guide is moved to ' + getGuideConfig())
def driveGuide(guideConfig):
# Set configuration
sics.set('/commands/optics/guide/configuration', guideConfig.key)
log('Moving guide to ' + guideConfig.key)
sicsController = SicsCore.getSicsController()
commandController = sicsController.findComponentController(
'/commands/optics/guide')
# Setting of configuration and starting a command are committed to SICS via different communication channels
# In order to make those in sync, we need to wait for the configuration to be settled.
time.sleep(0.1)
# Start command now
commandController.syncExecute()
log('Guide is moved to ' + getGuideConfig())
def setupMeasurement(parameters, meas_mode):
# parameters
script = strOrDefault(parameters['SetupScript'])
att_algo = str(parameters['AttenuationAlgorithm']).lower()
att_angle = int(parameters['AttenuationAngle'])
acq_mode = ACQUISITION_MODE.ba # all acquisitions are done via ba mode
# ATTENUATION_ALGO = Enumeration('fixed', 'iterative')
att_algos = dict()
att_algos["fixed attenuation"] = ATTENUATION_ALGO.fixed
att_algos["iterative attenuation"] = ATTENUATION_ALGO.iterative
# check parameters
if att_algo not in att_algos:
raise Exception('unknown attenuation algorithm: ' + att_algo)
if att_angle not in ATT_VALUES:
raise Exception('unexpected attenuation angle: %i' % att_angle)
if meas_mode not in MEASUREMENT_MODE:
raise Exception('unknown measurement mode: ' + meas_mode)
if acq_mode not in ACQUISITION_MODE:
raise Exception('unknown acquisition mode: ' + acq_mode)
# state (global variable)
state.att_algo = att_algos[att_algo]
state.att_angle = att_angle
state.meas_mode = meas_mode
state.acq_mode = acq_mode
if state.meas_mode == MEASUREMENT_MODE.transmission:
# set transmission flag
slog('Set instrument to transmission mode')
sics.set('transmissionflag', 1)
else:
# unset transmission flag
slog('Set instrument to scattering mode')
sics.set('transmissionflag', 0)
time.sleep(0.5)
# before instrument can move to new configuration, move to safe attenuation angle
driveToSafeAtt()
# run configuration script
slog('Driving configuration script...')
exec script in globals()
def driveGuide(value):
if value not in GUIDE_CONFIG:
slog('[WARNING] unknown guide configuration: ' + value)
# set target configuration
sics.set('/commands/optics/guide/configuration', value)
if getGuideConfig() == value:
slog('Guide was already moved to %s (no action is required)' % value)
return
slog('Moving guide to ' + value)
sicsController = sics.getSicsController()
controller = sicsController.findComponentController('/commands/optics/guide')
# setting of configuration and starting a command are committed to SICS via different communication channels
# in order to make those in sync, we need to wait for the configuration to settle
time.sleep(0.5)
counter = 0
while True:
try:
counter += 1
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
sics.handleInterrupt()
timeout = datetime.now() + timedelta(minutes=5)
controller.syncExecute()
while (getGuideConfig() != value) and (datetime.now() < timeout):
sleep(0.5)
break
except (Exception, SicsExecutionException) as e:
if isInterruptException(e) or (counter >= 20):
raise
slog(str(e), f_err=True)
slog('Retry moving guide')
time.sleep(1)
slog('Guide is moved to ' + getGuideConfig())
def multi_set(self):
if not self.wavelength is None:
sics.set('/instrument/velocity_selector/wavelength', self.wavelength)
if not self.wavelength_spread is None:
log('set wavelength_spread to ' + str(self.wavelength_spread))
sics.set('/instrument/velocity_selector/wavelength_spread', self.wavelength_spread)
if not self.beamcenterx is None :
log('set beam centre x to ' + str(self.beamcenterx))
sics.set('beamcenterx', self.beamcenterx)
if not self.beamcenterz is None :
log('set beam centre z to ' + str(self.beamcenterz))
sics.set('beamcenterz', self.beamcenterz)
def initiate(info):
# parameters
title = info.experimentTitle
pnumber = str(info.proposalNumber)
users = str(info.users)
sample_stage = str(info.sampleStage)
# update sics
sics.set('title', title)
sics.execute('hset /experiment/experiment_identifier ' + pnumber)
sics.set('user', users)
#sics.execute('hset /user/email ' + email) # !!!
#sics.execute('hset /user/phone ' + phone)
# clear environment drive scripts
state.env_drive = dict()
setSampleStage(sample_stage)
def multi_set(self):
if not self.wavelength is None:
log("set wavelength_spread to " + str(self.wavelength_spread))
sics.set("/instrument/velocity_selector/wavelength", self.wavelength)
if not self.wavelength_spread is None:
log("set wavelength_spread to " + str(self.wavelength_spread))
sics.set("/instrument/velocity_selector/wavelength_spread", self.wavelength_spread)
if not self.beamcenterx is None:
log("set beam centre x to " + str(self.beamcenterx))
sics.set("beamcenterx", self.beamcenterx)
if not self.beamcenterz is None:
log("set beam centre z to " + str(self.beamcenterz))
sics.set("beamcenterz", self.beamcenterz)
def multi_set(self):
if not self.wavelength is None:
log('set wavelength_spread to ' + str(self.wavelength_spread))
sics.set('/instrument/velocity_selector/wavelength', self.wavelength)
if not self.wavelength_spread is None:
log('set wavelength_spread to ' + str(self.wavelength_spread))
sics.set('/instrument/velocity_selector/wavelength_spread', self.wavelength_spread)
if not self.beamcenterx is None :
log('set beam centre x to ' + str(self.beamcenterx))
sics.set('beamcenterx', self.beamcenterx)
if not self.beamcenterz is None :
log('set beam centre z to ' + str(self.beamcenterz))
sics.set('beamcenterz', self.beamcenterz)
def initiate(info):
# parameters
title = strOrDefault(info.experimentTitle, "Unknown")
pnumber = strOrDefault(info.proposalNumber, "0")
users = strOrDefault(info.users, "Unknown")
emails = strOrDefault(info.emails, "Unknown")
phones = strOrDefault(info.phones, "Unknown")
sample_stage = str(info.sampleStage)
# update sics
sics.set('title', title)
sics.execute('hset /experiment/experiment_identifier ' + pnumber)
sics.set('user', users)
sics.execute('hset /user/email "%s"' % emails)
sics.execute('hset /user/phone "%s"' % phones)
# clear environment drive scripts
state.env_drive = dict()
setSampleStage(sample_stage)
def setSample(position, name="UNKNOWN", description="UNKNOWN", thickness=0, driveSampleStage=True):
if driveSampleStage:
driveSample(position)
# Set sample name and description
sics.set("samplename", name)
sics.set("sampledescription", description)
sics.set("samplethickness", thickness)
def setSample(position, name='UNKNOWN', description='UNKNOWN', thickness=0, driveSampleStage=True):
if driveSampleStage:
driveSample(position)
# Set sample name and description
sics.set('samplename', name)
sics.set('sampledescription', description)
sics.set('samplethickness', thickness)
def setSample(position, name='UNKNOWN', description='UNKNOWN', thickness=0, driveSampleStage=True):
if driveSampleStage:
driveSample(position)
# Set sample name and description
sics.set('samplename', name)
sics.set('sampledescription', description)
sics.set('samplethickness', thickness)
def driveGuide(value):
if value not in GUIDE_CONFIG:
slog('[WARNING] unknown guide configuration: ' + value)
# set target configuration
sics.set('/commands/optics/guide/configuration', value)
slog('Moving guide to ' + value)
sicsController = sics.getSicsController()
controller = sicsController.findComponentController(
'/commands/optics/guide')
# setting of configuration and starting a command are committed to SICS via different communication channels
# in order to make those in sync, we need to wait for the configuration to settle
time.sleep(0.5)
counter = 0
while True:
try:
counter += 1
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
sics.handleInterrupt()
controller.syncExecute()
sics.handleInterrupt()
break
except (Exception, SicsExecutionException) as e:
if isInterruptException(e) or (counter >= 20):
raise
slog('Retry moving guide')
time.sleep(1)
slog('Guide is moved to ' + getGuideConfig())
def setupSample(parameters):
# parameters
name = parameters['Name']
description = parameters['Description']
thickness = float(parameters['Thickness'])
position = float(parameters['Position'])
# state
state.sample_name = name
state.sample_position = position
# set sample name and description
sics.set('samplename', name)
sics.set('sampledescription', description)
sics.set('samplethickness', thickness)
# drive to sample position
if state.sample_stage != SAMPLE_STAGE.fixed:
driveToSamplePosition(position)
def setupSample(parameters):
# parameters
name = strOrDefault(parameters['Name'], "Unknown")
description = strOrDefault(parameters['Description'], "N.A.")
thickness = float(parameters['Thickness'])
position = float(parameters['Position'])
# state
state.sample_name = name
state.sample_position = position
# set sample name and description
sics.set('samplename', name)
sics.set('sampledescription', description)
sics.set('samplethickness', thickness)
# drive to sample position
if state.sample_stage != SAMPLE_STAGE.fixed:
driveToSamplePosition(position)
# configuration unpol 1
log('drive to configuration unpol 1')
driveGuide(guideConfig.g1)
#don't change below scan command
scan_wavelength(wavelengthList, attList, mode, preset)
# configuration -+
#polariser in
log('drive to configuration -+')
driveGuide(guideConfig.p1)
scan_wavelength(wavelengthList, attList, mode, preset)
#
# configuration --
#polariser in
log('drive to configuration --')
sics.set('/sample/isops/relay', 1)
sleep(1)
sics.set('/sample/isops/relay', 0)
scan_wavelength(wavelengthList, attList, mode, preset)
#
# configuration +-
# Drive flipper
log('drive to configuration +-')
driveFlipper(1)
#sics.set('/instrument/flipper/set_frequency', 407)
sleep(60)
scan_wavelength(wavelengthList, attList, mode, preset)
#
# configuration ++
# Drive flipper
def setupMeasurement(parameters, meas_mode):
def lookup(parameters, name):
if name in parameters:
value = parameters[name]
if value is not None:
return int(value)
else:
return None # e.g. for ba mode parameters can be set to None
return None
# parameters
script = parameters['SetupScript']
att_algo = str(parameters['AttenuationAlgorithm']).lower()
att_angle = int(parameters['AttenuationAngle'])
acq_mode = ACQUISITION_MODE.ba
min_time = lookup(parameters, 'MinTime')
max_time = lookup(parameters, 'MaxTime')
counts = lookup(parameters, 'Counts')
bm_counts = lookup(parameters, 'BmCounts')
# ATTENUATION_ALGO = Enumeration('fixed', 'iterative', 'smart')
att_algos = dict()
att_algos["fixed attenuation"] = ATTENUATION_ALGO.fixed
att_algos["iterative attenuation"] = ATTENUATION_ALGO.iterative
att_algos["smart attenuation"] = ATTENUATION_ALGO.smart
# check parameters
if att_algo not in att_algos:
raise Exception('unknown attenuation algorithm: ' + att_algo)
if att_angle not in ATT_VALUES:
raise Exception('unexpected attenuation angle: %i' % att_angle)
if meas_mode not in MEASUREMENT_MODE:
raise Exception('unknown measurement mode: ' + meas_mode)
if acq_mode not in ACQUISITION_MODE:
raise Exception('unknown acquisition mode: ' + acq_mode)
# state (global variable)
state.att_algo = att_algos[att_algo]
state.att_angle = att_angle
state.meas_mode = meas_mode
state.acq_mode = acq_mode
state.min_time = min_time
state.max_time = max_time
state.counts = counts
state.bm_counts = bm_counts
if state.meas_mode == MEASUREMENT_MODE.transmission:
# set transmission flag
slog('Set instrument to transmission mode')
sics.set('transmissionflag', 1)
else:
# unset transmission flag
slog('Set instrument to scattering mode')
sics.set('transmissionflag', 0)
time.sleep(0.5)
# before instrument can move to new configuration, move to safe attenuation angle
driveToSafeAtt()
# run configuration script
exec script in globals()
def setFlip(flag):
sics.set('/sample/isops/relay', 1)
sleep(60)
sics.set('/sample/isops/relay', 0)
sleep(60)
