def top_associations(self, request, pk):
""" Retrieve top associations for the selected study. Can add other filters. Check the FAQ for details on the filters. """
filters = _get_filter_from_params(request.query_params)
filters['study_id'] = [pk]
paginator = EsPagination()
limit = paginator.get_limit(request)
offset = paginator.get_offset(request)
associations, count = elastic.load_filtered_top_associations(filters,offset,limit)
queryset = EsQuerySet(associations, count)
paginated_asso = self.paginate_queryset(queryset)
return self.get_paginated_response(paginated_asso)
def top_list(self, request):
""" Retrieve the top genes based on the number of significant associations and provide full gene information. """
filters = _get_filter_from_params(request.query_params)
if filters['significant'] == []:
filters['significant'] = ['p']
paginator = EsPagination()
limit = paginator.get_limit(request)
offset = paginator.get_offset(request)
genes, count = elastic.load_filtered_top_genes(filters, offset, limit)
queryset = EsQuerySet(genes, count)
paginated_genes = self.paginate_queryset(queryset)
return self.get_paginated_response(paginated_genes)
def list(self, request):
""" List all associations sorted by score. """
filters = _get_filter_from_params(request.query_params)
if len(filters['significant']) == 0:
filters['significant'] = 'p'
last_el = request.query_params.get('lastel', '')
limit = EsPagination().get_limit(request)
associations, count, lastel = elastic.load_filtered_top_associations_search_after(filters,last_el,limit)
queryset = EsQuerySetLastEl(associations, count, lastel)
# associations, count = elastic.load_filtered_top_associations(filters,offset,limit)
# queryset = EsQuerySet(associations, count)
paginated_asso = self.paginate_queryset(queryset)
return self.get_paginated_response({'results': paginated_asso, 'count': count, 'lastel': [lastel[0], lastel[1]]})