def import_workflow(path, admin_gi, user_gi):
"""Import a workflow path to specified Galaxy instance."""
importer = BioBlendImporterGalaxyInterface(
admin_gi=admin_gi,
user_gi=user_gi
)
workflow = _raw_dict(path, importer)
return importer.import_workflow(workflow)
def import_workflow(path, admin_gi, user_gi, from_path=False):
"""Import a workflow path to specified Galaxy instance."""
if not from_path:
importer = BioBlendImporterGalaxyInterface(admin_gi=admin_gi,
user_gi=user_gi)
workflow = _raw_dict(path, importer)
return importer.import_workflow(workflow)
else:
# TODO: Update bioblend to allow from_path.
payload = dict(from_path=path)
workflows_url = user_gi._make_url(user_gi.workflows)
workflow = Client._post(user_gi.workflows, payload, url=workflows_url)
return workflow
def import_workflow(path, admin_gi, user_gi, from_path=False):
"""Import a workflow path to specified Galaxy instance."""
if not from_path:
importer = BioBlendImporterGalaxyInterface(
admin_gi=admin_gi,
user_gi=user_gi
)
workflow = _raw_dict(path, importer)
return importer.import_workflow(workflow)
else:
# TODO: Update bioblend to allow from_path.
path = os.path.abspath(path)
payload = dict(
from_path=path
)
workflows_url = user_gi._make_url(user_gi.workflows)
workflow = Client._post(user_gi.workflows, payload, url=workflows_url)
return workflow
def import_workflow(path, admin_gi, user_gi, from_path=False):
"""Import a workflow path to specified Galaxy instance."""
if not from_path:
importer = BioBlendImporterGalaxyInterface(admin_gi=admin_gi,
user_gi=user_gi)
workflow = _raw_dict(path, importer)
return user_gi.workflows.import_workflow_dict(workflow)
else:
path = os.path.abspath(path)
workflow = user_gi.workflows.import_workflow_from_local_path(path)
return workflow
def import_workflow(path, admin_gi, user_gi, from_path=False):
"""Import a workflow path to specified Galaxy instance."""
if not from_path:
importer = BioBlendImporterGalaxyInterface(admin_gi=admin_gi,
user_gi=user_gi)
workflow = _raw_dict(path, importer)
return user_gi.workflows.import_workflow_dict(workflow)
else:
# TODO: Update bioblend to allow from_path.
path = os.path.abspath(path)
payload = dict(from_path=path)
workflows_url = user_gi.url + '/workflows'
workflow = user_gi.workflows._post(payload, url=workflows_url)
return workflow
def import_workflow(path, admin_gi, user_gi):
"""Import a workflow path to specified Galaxy instance."""
importer = BioBlendImporterGalaxyInterface(admin_gi=admin_gi,
user_gi=user_gi)
workflow = _raw_dict(path, importer)
return importer.import_workflow(workflow)