def test_validate_with_invalid_large_list():
result = validate({"maxItems": 2}, [1, 2, 3])
f.assert_failure(result)
nose.assert_equal(
result.getValue(),
"Value [1, 2, 3] for field '<obj>' must have length less than or equal to 2"
)
def test_check_mounted_fastq_files_that_are_not_gzipped():
file = f.create_temp_file("")
input_ = [{"fastq": {"id": "t", "value": file}}]
result = main.check_mounted_files(f.create_biobox_dict(input_))
f.assert_failure(result)
nose.assert_equal(result.getValue(),
"Provided file '{0}' is not gzipped.".format(file))
def test_validate_with_missing_properties():
schema = {
"properties": {
"version": {},
"arguments": {}
},
"required": ["version", "arguments"]
}
input_ = {"version": {}}
result = validate(schema, input_)
f.assert_failure(result)
nose.assert_equal(result.getValue(), "'arguments' is a required property")
def test_check_mounted_files_with_not_existing_files():
input_ = {
"version":
"0.9.0",
"arguments": [{
"fastq": [{
"id": "t",
"value": "/path/to/file",
"type": "paired"
}]
}]
}
result = main.check_mounted_files(input_)
f.assert_failure(result)
def test_loading_invalid_yaml():
file_ = f.create_temp_file("'invalid yaml")
result = main.parse_yaml(file_)
f.assert_failure(result)
def test_check_mounted_files_with_single_entry_having_missing_file():
input_ = [{"fastq": {"id": "t", "value": "/path/to/file"}}]
result = main.check_mounted_files(f.create_biobox_dict(input_))
f.assert_failure(result)
nose.assert_equal(result.getValue(),
"Provided path '/path/to/file' does not exist.")
def test_validate_with_invalid_large_list():
result = validate({"maxItems": 2}, [1, 2, 3])
f.assert_failure(result)
nose.assert_equal(result.getValue(), "[1, 2, 3] is too long")
